Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0106
         (597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31891| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   1e-13
SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022)                    71   5e-13
SB_19356| Best HMM Match : Cucumo_2B (HMM E-Value=7.3)                 61   6e-10
SB_25773| Best HMM Match : 7tm_1 (HMM E-Value=1.68156e-44)             31   0.93 
SB_29174| Best HMM Match : TPR_1 (HMM E-Value=0.55)                    29   2.9  
SB_53446| Best HMM Match : Neur_chan_memb (HMM E-Value=0.038)          29   3.8  
SB_58929| Best HMM Match : Halo_GVPC (HMM E-Value=0.67)                28   5.0  

>SB_31891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 46/124 (37%), Positives = 62/124 (50%), Gaps = 15/124 (12%)
 Frame = -2

Query: 575 EVSGLHNWIYFSKEEAANRLNYLGYLKYRQ-FG--------------ERGAVIKFHFTQQ 441
           EV G HNWI F  +E A  ++Y G+   R  F               +   ++   F+ +
Sbjct: 159 EVIGFHNWIQFYLQEKAGVVDYKGFFPNRNSFNITPVMQKRMSTDAMKECQLVTIQFSWK 218

Query: 440 GVDKPVNSMFIGTSPELEMALYTLCFVTRADSECNLKLSNNDVSIMTHTFRYRSKNLIGS 261
              KP+ S FIGTSPE EMALYT+CF+     + +L + + DV I  HTF       IGS
Sbjct: 219 SGVKPIGSSFIGTSPEFEMALYTVCFLAGGGHDVHLDMEDYDVIIKIHTF--HGGKYIGS 276

Query: 260 GYPQ 249
            YPQ
Sbjct: 277 CYPQ 280


>SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022)
          Length = 616

 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 34/91 (37%), Positives = 47/91 (51%)
 Frame = -2

Query: 572 VSGLHNWIYFSKEEAANRLNYLGYLKYRQFGERGAVIKFHFTQQGVDKPVNSMFIGTSPE 393
           V G H+W+ F  +E     +Y GY        RG  +K  F     DK V+S F+GTSPE
Sbjct: 45  VKGYHSWLQFYLQEKRRDADYHGYYALSTSEPRG--LKLKFDVNNYDKVVSSFFLGTSPE 102

Query: 392 LEMALYTLCFVTRADSECNLKLSNNDVSIMT 300
            E +LYT CF  R   EC  ++++  + I T
Sbjct: 103 FEFSLYTACFYLRPGQECTCRINSQTIKIRT 133


>SB_19356| Best HMM Match : Cucumo_2B (HMM E-Value=7.3)
          Length = 194

 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 25/74 (33%), Positives = 44/74 (59%)
 Frame = -2

Query: 467 VIKFHFTQQGVDKPVNSMFIGTSPELEMALYTLCFVTRADSECNLKLSNNDVSIMTHTFR 288
           ++   F  + V KP+   F+GTSPE E++LYT CF+   + +C  +++   V I+  T+R
Sbjct: 123 IVTARFKYRTVQKPIGGFFVGTSPEFELSLYTTCFLKYPNGKCTCQMNGKKVKIV--TYR 180

Query: 287 YRSKNLIGSGYPQI 246
            R  +L+ + YP +
Sbjct: 181 DRRTSLVATAYPVV 194


>SB_25773| Best HMM Match : 7tm_1 (HMM E-Value=1.68156e-44)
          Length = 906

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +1

Query: 307 ILTSLLDSFRLHSLSARVTKHKVYNAISNSGDVPMNIELTGLSTPCWVKWNLITAPRS 480
           IL + L ++  +  S      K+    SN+ D P N     L  PC V   L T P++
Sbjct: 314 ILGACLPAYHYYEYSPGAASSKIIATDSNANDEPANHVQLELEDPCAVNTKLTTLPQN 371


>SB_29174| Best HMM Match : TPR_1 (HMM E-Value=0.55)
          Length = 420

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 385 ISNSGDVPMNIELTGLSTPCWVKWNLITAPR 477
           +S  GDV + I  T     CWVK +++T  R
Sbjct: 58  VSTGGDVTLPISATASKYRCWVKGHILTQYR 88


>SB_53446| Best HMM Match : Neur_chan_memb (HMM E-Value=0.038)
          Length = 406

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = +3

Query: 303 HDTDIVVGQFQVTLAVSTSHEAQSIQCHFQLR*CTNEHRVNR---LVHSLLGEVEFNHCS 473
           H   +V G F +   +S S    S+   FQ+R  T    +NR   ++  +L    F H  
Sbjct: 169 HHEKVVYGTFAIYYIISRSLSVMSLILRFQVRAPTPYSSINRCLSVMSLILRYTRFQHTH 228

Query: 474 TLPKLS 491
           T P  S
Sbjct: 229 TSPAKS 234


>SB_58929| Best HMM Match : Halo_GVPC (HMM E-Value=0.67)
          Length = 712

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +3

Query: 231 GSDKLDLWIATTD*IFTPVTESVSHDTDIVVGQFQVTLAVSTSHEAQSIQ 380
           G D LDLW AT +         V HD D V+  +  T    T  +A  +Q
Sbjct: 382 GEDVLDLWTATNNTKTDVQAHKVKHDKD-VLDLWTATNNTKTDVQAHKVQ 430


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,914,559
Number of Sequences: 59808
Number of extensions: 291752
Number of successful extensions: 601
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)