Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0106
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75544-4|CAA99880.1|  307|Caenorhabditis elegans Hypothetical pr...    83   1e-16
U39995-3|AAF99995.2|  572|Caenorhabditis elegans Hypothetical pr...    58   5e-09

>Z75544-4|CAA99880.1|  307|Caenorhabditis elegans Hypothetical
           protein K02A11.3 protein.
          Length = 307

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 3/128 (2%)
 Frame = -2

Query: 596 VSELKNGEVSGLHNWI--YFSKEEAANRLNYLGYLKYRQFGERGAVIKFHFTQQGVDKPV 423
           + E KNGE+SG+HNW+  Y  +       +Y G+   ++F    A+    FT  G+ K  
Sbjct: 178 IGEAKNGEISGMHNWVRFYVLENNRTENFDYKGFT-VKRFNIMAAL---KFTWDGLLKRA 233

Query: 422 NSMFIGTSPELEMALYTLCFVTRADSE-CNLKLSNNDVSIMTHTFRYRSKNLIGSGYPQI 246
            S+ IGTSPE +MALYT+CF++R   E C+++     + I +     ++K  IGS YP  
Sbjct: 234 GSILIGTSPEFDMALYTMCFLSRRGRETCDVEFDGCPLQITSFEIMQQNKVYIGSIYPTA 293

Query: 245 *LVTAACK 222
             +T  C+
Sbjct: 294 GRITDQCR 301


>U39995-3|AAF99995.2|  572|Caenorhabditis elegans Hypothetical
           protein M60.2 protein.
          Length = 572

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
 Frame = -2

Query: 590 ELKNGEVSGLHNWIYFSKEEAANRLNYLGYLKYRQFGERGAVIKFHFTQQGVDKPVNSMF 411
           E+K+ EV G H+W+ +  E+ A+++ Y GY  +    +   +  F +   G  KP    F
Sbjct: 460 EIKSNEVDGQHDWVRYYTEQKADKMVYDGYYTH----DENLIGTFQYKWNGALKPKGGFF 515

Query: 410 IGTSPELEMALYTLCFVTRAD-SECNLKLSNNDVSIMTH 297
            GTSP  + ++ ++C +   +   C+ K++N  +++ ++
Sbjct: 516 TGTSPAFDFSILSVCALAHGNGGNCHFKVTNYPITVTSY 554



 Score = 35.5 bits (78), Expect = 0.029
 Identities = 24/101 (23%), Positives = 42/101 (41%)
 Frame = -2

Query: 596 VSELKNGEVSGLHNWIYFSKEEAANRLNYLGYLKYRQFGERGAVIKFHFTQQGVDKPVNS 417
           V E     V+   NW+ F  +E A + NY G+         G  I   F     +    S
Sbjct: 173 VGEATGTVVNRFANWVGFYIQENAGKFNYHGWFTKL----NGIAIDLQFVAGSDEDLETS 228

Query: 416 MFIGTSPELEMALYTLCFVTRADSECNLKLSNNDVSIMTHT 294
             + +SP  E A YT+  +T  +++ ++ +   ++ I   T
Sbjct: 229 FLLNSSPTFEFAAYTVAALT--NTQPSILIQGEEIDIQAPT 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,877,582
Number of Sequences: 27780
Number of extensions: 220699
Number of successful extensions: 460
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)