Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0106
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.3  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              21   9.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 349 SARVTKHKVYNAISNSGDVPMNIELT 426
           S +V+KH+  +  S +G  P N+  T
Sbjct: 711 SFKVSKHEEVSRTSTAGQFPTNVATT 736


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 338 NLKLSNNDVSIMTHTFRYRSKNLIGSGY 255
           +LKLSN D+S+   T    +      GY
Sbjct: 725 DLKLSNPDISVEDGTLSINNIQKTNEGY 752


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 408 NEHRVNRLVHSLLGEVEFNHCSTLPKL 488
           +  +VNRLV++     E N C    KL
Sbjct: 92  DSEQVNRLVNNCKDITESNSCKKSSKL 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,081
Number of Sequences: 438
Number of extensions: 3094
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)