Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0105
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   171   5e-44
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   0.97 
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p...    25   6.9  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.9  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   9.1  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   9.1  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  171 bits (417), Expect = 5e-44
 Identities = 91/182 (50%), Positives = 118/182 (64%), Gaps = 1/182 (0%)
 Frame = +2

Query: 89  IPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHT 268
           +PN HFHKDWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ 
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNM 67

Query: 269 KVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP 448
           KVRAGRGFTL E++AAG++   A TIGI VD RRRN+S ESLQ NV+RIK Y A LI+FP
Sbjct: 68  KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFP 127

Query: 449 -KGKKVLKGVANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARSI 625
            K  +  KG A +      T +   ++P+ Q A +  A+PITE+ KNF A+  L   R+ 
Sbjct: 128 RKAGQPKKGDATDVSGAEQTDV-AAVLPITQEAVEE-AKPITEEAKNFNAFSTLSNERAY 185

Query: 626 AK 631
           A+
Sbjct: 186 AR 187


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -1

Query: 301  TKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 182
            T   +STG+Y  M    +   W S   T    C TWSY  S+ Y
Sbjct: 1215 TVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258


>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 145

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +2

Query: 20  SGSPGCRNSHEXLRRQMGKGNNMIPNGHFHKDWQRFVKTWFN 145
           + S   +   E  +R+  K    IP GH  +DW   V +  N
Sbjct: 21  ANSKDTKGLKEERKRKKRKNKYKIPPGHTQQDWDALVASGKN 62


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 282 VEDSLFVKLGPQD*TQYLPERLELL 356
           +ED+LF +L   D T Y  +RLE+L
Sbjct: 95  LEDALFSQLDEFDDTAYREQRLEML 119


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 93  LMDISTRIGKDLLKLGLTSQLDDTAES 173
           L+DIS R G+D     L S+L D  +S
Sbjct: 556 LLDISKRKGRDSFVAALNSRLKDIKDS 582


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 27/86 (31%), Positives = 37/86 (43%)
 Frame = -1

Query: 514 T*LCSQLTFFFIGHTLQHLFAFREQYKTRSVFLYSLNIDLQ*FNRLVASTGIYSNSNRSG 335
           T LC     FF+ H +  L A   + K R +     N  L   +R+V +   YSN  +  
Sbjct: 330 TLLCLSPKQFFLKHWISSLDAAFFRVKDRRL----RNTGLPHLSRVVWT---YSNQYKEE 382

Query: 334 KYWVQSCGPNFTKSESSTGAYFSMVP 257
              + S   N  KS  S G  FS+VP
Sbjct: 383 PSIMNSNISNILKSGFSIGKKFSVVP 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,442
Number of Sequences: 5004
Number of extensions: 56163
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)