Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0105
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 189 2e-48
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 186 1e-47
06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003... 29 4.1
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559... 29 4.1
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 29 4.1
12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923,457... 28 5.4
03_02_0098 + 5608787-5610812,5610956-5611053 28 7.1
11_06_0545 + 24839536-24843421,24843871-24844310 27 9.4
04_01_0039 + 455760-457631 27 9.4
02_04_0147 + 20194244-20195717,20195953-20195969 27 9.4
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 189 bits (460), Expect = 2e-48
Identities = 95/186 (51%), Positives = 125/186 (67%), Gaps = 2/186 (1%)
Frame = +2
Query: 68 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 247
M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPIV+C
Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60
Query: 248 PTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYR 427
T++Y+ K RAGRGFTL E++AAG+ FA TIGI+VD RR+N+S+E LQ NVQR+K Y+
Sbjct: 61 QTLKYNMKSRAGRGFTLEELKAAGIPKKFAPTIGISVDHRRKNRSLEGLQANVQRLKTYK 120
Query: 428 ARLILFP-KGKKVLKGVANEEERKLATQLRGPLMPVQQPAPKSV-ARPITEDEKNFKAYQ 601
A+L++FP + +KV G + EE ATQ++G MP+ + +SV +T+D K FKAY
Sbjct: 121 AKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEKRSVEVVKVTDDMKAFKAYA 180
Query: 602 YLRGAR 619
LR R
Sbjct: 181 KLRVER 186
>03_05_0108 -
20887146-20887370,20887460-20887618,20887930-20888063,
20888597-20888705
Length = 208
Score = 186 bits (453), Expect = 1e-47
Identities = 93/186 (50%), Positives = 125/186 (67%), Gaps = 2/186 (1%)
Frame = +2
Query: 68 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 247
M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPIV+C
Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60
Query: 248 PTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYR 427
T++Y+ K RAGRGFTL E++AAG+ +A TIGI+VD RR+N+S+E LQ NVQR+K Y+
Sbjct: 61 QTLKYNMKSRAGRGFTLEELKAAGIPKKYAPTIGISVDHRRKNRSLEGLQANVQRLKTYK 120
Query: 428 ARLILFP-KGKKVLKGVANEEERKLATQLRGPLMPVQQPAPKSV-ARPITEDEKNFKAYQ 601
A+L++FP + +KV G + EE ATQ++G MP+ + +SV +T++ K FKAY
Sbjct: 121 AKLVIFPRRARKVKAGDSTAEELATATQVQGDYMPIARGEKRSVEVVKVTDEMKAFKAYA 180
Query: 602 YLRGAR 619
LR R
Sbjct: 181 KLRVER 186
>06_03_0711 +
23798998-23799106,23799838-23799957,23800181-23800317,
23800418-23800579,23800707-23800793,23800872-23800958,
23801317-23801454,23802023-23802214,23802287-23802385,
23802490-23802564
Length = 401
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 362 DLQQFQSFGQILGSILRP 309
DL+ QS GQI+G +LRP
Sbjct: 54 DLKSLQSVGQIIGEVLRP 71
>02_01_0754 -
5595813-5595887,5595973-5596071,5596136-5596327,
5596992-5597129,5597415-5597501,5597583-5597669,
5597795-5597956,5598089-5598225,5598483-5598602,
5600668-5600773
Length = 400
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 362 DLQQFQSFGQILGSILRP 309
DL+ QS GQI+G +LRP
Sbjct: 53 DLKSLQSVGQIIGEVLRP 70
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 383 VESLQINVQRIKEYRARLILFPKGKKVLKGVANEEERKLATQL 511
++SL+ VQR+ E R R +L P G ++E R A +
Sbjct: 182 IQSLRTRVQRVSERRLRYMLNPTGSLSSSNYIDQERRLSALNI 224
>12_01_0564 -
4567650-4568063,4568154-4568624,4568722-4568923,
4570395-4571104
Length = 598
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +3
Query: 144 TSQLDDTAESKIE*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYAPVEDSLFVKLGP 314
T +L + S++ ++L L++ LG + D + L Y PVEDSLF+++ P
Sbjct: 343 TMELHERVYSEMAMKRLLDNLNIKVLGNTTV--DRLPIFSFLIYPPVEDSLFLRVEP 397
>03_02_0098 + 5608787-5610812,5610956-5611053
Length = 707
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -2
Query: 552 DLGAGC*TGINGPRSC---VASLRSSSLATPFSTFLPFGNSIR 433
D GAG G++G RSC V ++ +++A P LP +IR
Sbjct: 79 DAGAGAGAGVDGGRSCGEVVGAVWRAAMAAPDDPELPSLGAIR 121
>11_06_0545 + 24839536-24843421,24843871-24844310
Length = 1441
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 338 RTIGIAVDPRRRNK--SVESLQINVQRIKEYRARLILFPKGKKVLKGVANEE 487
R IA P+ NK +E+ + I+ + A+ I+ PK ++L GVA+ +
Sbjct: 971 RNTDIAELPKEINKLQDLETFDMRGTNIESFPAKSIVLPKLARLLSGVAHTD 1022
>04_01_0039 + 455760-457631
Length = 623
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = -1
Query: 166 AVSSSWLVKPSFNKSLPILVEMSIRYHIIPLAHLTSEXLVRIPAARGSTS 17
A+ + ++ + L I+VE S R + P+ + ++ L +IP GST+
Sbjct: 174 AMGLNAIIVLEMEEELDIVVEQSARLGVEPVIGVRAKLLTKIPGHFGSTA 223
>02_04_0147 + 20194244-20195717,20195953-20195969
Length = 496
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 238 YRT*RPSCRTWSYGLSF 188
Y T RP CR W + LSF
Sbjct: 264 YHTARPGCRYWVFSLSF 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,982,052
Number of Sequences: 37544
Number of extensions: 381878
Number of successful extensions: 909
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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