Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0105
(634 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0) 201 3e-52
SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35) 34 0.083
SB_50893| Best HMM Match : SH3_1 (HMM E-Value=2e-33) 31 1.0
SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_47063| Best HMM Match : APOBEC_C (HMM E-Value=0.41) 28 5.5
SB_58892| Best HMM Match : IncA (HMM E-Value=1.3) 28 7.2
SB_33516| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_32771| Best HMM Match : IncA (HMM E-Value=1.4) 28 7.2
SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_18936| Best HMM Match : Glyco_hydro_67N (HMM E-Value=7) 27 9.6
SB_6638| Best HMM Match : CaMBD (HMM E-Value=5.1) 27 9.6
>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
Length = 600
Score = 201 bits (491), Expect = 3e-52
Identities = 98/171 (57%), Positives = 122/171 (71%), Gaps = 1/171 (0%)
Frame = +2
Query: 74 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 253
K NN+IPNGHFHKDWQR+VKTWF+QP R+ RR+ R LRPIVRCPT
Sbjct: 4 KRNNIIPNGHFHKDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPT 63
Query: 254 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 433
+Y+TKVRAGRGFTL E++AAG+ A TIGIAVD RR+N+S ESLQ NVQR+KEY+++
Sbjct: 64 FKYNTKVRAGRGFTLDELKAAGIPRKVAPTIGIAVDHRRKNRSAESLQANVQRLKEYKSK 123
Query: 434 LILFP-KGKKVLKGVANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEK 583
LI+FP K K +G + + A QL+GP+MP+ Q + ARPITEDEK
Sbjct: 124 LIVFPRKANKPKQGDSEAADLANAVQLQGPVMPIPQESVPIKARPITEDEK 174
>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
Length = 440
Score = 34.3 bits (75), Expect = 0.083
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 350 IAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGVANEEERKLATQ 508
IA+ R + + + RI+E R ++F GK V G +EE+ KLA +
Sbjct: 301 IALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSKLAAR 353
>SB_50893| Best HMM Match : SH3_1 (HMM E-Value=2e-33)
Length = 665
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +2
Query: 359 DPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGVANEEERKLATQLRGPLMPVQQ 538
+P + ++ E+ + N ++ +E A + K KKVL + E+ ++LR
Sbjct: 462 EPAWKREAREAREANYKKPEEKVAPSVQHLKDKKVLPVLRPEDILSGKSELRKSWREPDV 521
Query: 539 PAPKSVARPITEDE 580
PAPK P EDE
Sbjct: 522 PAPKKPVPPPPEDE 535
>SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -2
Query: 45 EFLQPGDPLV*TPPP 1
EFLQPGDPLV PP
Sbjct: 33 EFLQPGDPLVLERPP 47
>SB_47063| Best HMM Match : APOBEC_C (HMM E-Value=0.41)
Length = 430
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 366 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 241
+GS V ++T NP L++R N +P R +L+W++ G +
Sbjct: 375 KGSWVALTVESSTLANPNILLARIQNLMPGRKASLLWFKATGKK 418
>SB_58892| Best HMM Match : IncA (HMM E-Value=1.3)
Length = 449
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 366 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHRTIGRNGP 220
+GS V +T NP L++R N +P R +L+W++ + + + P
Sbjct: 176 KGSWVALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEKGLKSDNP 226
>SB_33516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 83 YSPCPFDVGVSRANSCSPG 27
+ PC + V +R+NSCSPG
Sbjct: 34 HPPCSYLVDPARSNSCSPG 52
>SB_32771| Best HMM Match : IncA (HMM E-Value=1.4)
Length = 318
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 366 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHRTIGRNGP 220
+GS V +T NP L++R N +P R +L+W++ + + + P
Sbjct: 66 KGSWVALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEKGLKSDNP 116
>SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 462
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -1
Query: 199 GLSFLYSILLSAVSSSWLVKPSFNKSLPI 113
G F +IL+ A SS L++P F+ SLP+
Sbjct: 195 GFDFGKAILVKASLSSDLIRPGFDVSLPL 223
>SB_18936| Best HMM Match : Glyco_hydro_67N (HMM E-Value=7)
Length = 154
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 366 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 241
+GS A V +T NP L++R N +P R +L+W++ +
Sbjct: 60 KGSWAALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEK 103
>SB_6638| Best HMM Match : CaMBD (HMM E-Value=5.1)
Length = 165
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 366 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 241
+GS V ++T NP L++R N +P R L+W++ G +
Sbjct: 110 KGSWVALTVESSTLANPNILLARIQNLMPGRKALLLWFKATGKK 153
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,044,740
Number of Sequences: 59808
Number of extensions: 415834
Number of successful extensions: 2742
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2728
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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