Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0105
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...   177   4e-45
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    94   6e-20
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr...    33   0.22 
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr...    33   0.22 
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr...    33   0.22 
Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U41535-2|AAB63402.1|  731|Caenorhabditis elegans Hypothetical pr...    28   6.4  
U41535-1|AAK67247.1|  734|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AF098993-7|ABN43095.1|  525|Caenorhabditis elegans Hypothetical ...    28   6.4  
AF098993-6|AAC67469.2|  562|Caenorhabditis elegans Hypothetical ...    28   6.4  

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score =  177 bits (432), Expect = 4e-45
 Identities = 86/187 (45%), Positives = 119/187 (63%), Gaps = 1/187 (0%)
 Frame = +2

Query: 74  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 253
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR +VRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 254 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 433
            RY+TK R GRGF+L+E++AAG++   ARTIGIAVD RR NK+ E L+ N  R+KEY+A+
Sbjct: 64  KRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAK 123

Query: 434 LILFP-KGKKVLKGVANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLR 610
           LILFP K     KG ++ EE K+A QLRG ++P+         R +T+ E+  + ++ LR
Sbjct: 124 LILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLR 183

Query: 611 GARSIAK 631
             R+  K
Sbjct: 184 KERADKK 190


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 41/84 (48%), Positives = 54/84 (64%)
 Frame = +2

Query: 74  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 253
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR +VRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 254 VRYHTKVRAGRGFTLREIRAAGLN 325
            RY+TK R GRGF+L+E++AA  N
Sbjct: 64  KRYNTKTRLGRGFSLQELKAAEEN 87


>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
            F13B9.1c protein.
          Length = 1609

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +2

Query: 437  ILFPKGKKVLKGVANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 592
            ++F   K VLK V   + +  A   +GPL+P  Q AP +V   IT+  +N K
Sbjct: 879  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929


>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
            F13B9.1b protein.
          Length = 1614

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +2

Query: 437  ILFPKGKKVLKGVANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 592
            ++F   K VLK V   + +  A   +GPL+P  Q AP +V   IT+  +N K
Sbjct: 879  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929


>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
            F13B9.1a protein.
          Length = 1632

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +2

Query: 437  ILFPKGKKVLKGVANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 592
            ++F   K VLK V   + +  A   +GPL+P  Q AP +V   IT+  +N K
Sbjct: 901  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 951


>Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical
           protein ZK1010.8 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = -2

Query: 210 RGAT-ALAFF-ILFCFLRYRRAGWLNQVLTNL 121
           RGAT A+A + I++CF+++   GW  QV+ N+
Sbjct: 9   RGATIAIAVWNIIYCFIQFGILGWQFQVVKNI 40


>U41535-2|AAB63402.1|  731|Caenorhabditis elegans Hypothetical
           protein F18A1.6a protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 452 GKKVLKGVANEEERKLATQLRGPLMPVQQPAP 547
           GK +     NEE+R+LA  LR  +     PAP
Sbjct: 206 GKLLASKYPNEEDRELAEYLRDKIASTSTPAP 237


>U41535-1|AAK67247.1|  734|Caenorhabditis elegans Hypothetical
           protein F18A1.6b protein.
          Length = 734

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 452 GKKVLKGVANEEERKLATQLRGPLMPVQQPAP 547
           GK +     NEE+R+LA  LR  +     PAP
Sbjct: 209 GKLLASKYPNEEDRELAEYLRDKIASTSTPAP 240


>AF098993-7|ABN43095.1|  525|Caenorhabditis elegans Hypothetical
          protein T10B11.7b protein.
          Length = 525

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 20 SGSPGCRNSHEXLRRQMGKGNNMI 91
          S  P C NS++ LR +MG  N+ I
Sbjct: 23 SEQPSCSNSYKKLRHEMGSDNSNI 46


>AF098993-6|AAC67469.2|  562|Caenorhabditis elegans Hypothetical
           protein T10B11.7a protein.
          Length = 562

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 20  SGSPGCRNSHEXLRRQMGKGNNMI 91
           S  P C NS++ LR +MG  N+ I
Sbjct: 60  SEQPSCSNSYKKLRHEMGSDNSNI 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,843,482
Number of Sequences: 27780
Number of extensions: 318138
Number of successful extensions: 770
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)