Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0105
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.46 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   4.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   5.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   7.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -2

Query: 177 FCFLRYRRAGWLNQVLTNLCQSLWKC 100
           FC+ R   A W N V  NL  SL KC
Sbjct: 538 FCYFRRNAATWKNAVRHNL--SLHKC 561


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 202 SSTSCSWAVTSY 237
           S + C+W +TSY
Sbjct: 66  SGSKCTWTITSY 77


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 8   GV*TSGSPGCRNSHEXLRRQ 67
           G+  + + GC N H+ L+RQ
Sbjct: 321 GLVNNSAIGCWNEHQPLQRQ 340


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 8   GV*TSGSPGCRNSHEXLRRQ 67
           G+  + + GC N H+ L+RQ
Sbjct: 318 GLVGNSAVGCWNEHQSLQRQ 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,933
Number of Sequences: 438
Number of extensions: 4082
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)