Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0104
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    31   0.67 
12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638     30   1.5  
01_05_0560 - 23288078-23288370,23288448-23288733                       30   2.0  
04_04_0766 - 27923120-27923554,27923843-27924580,27924815-279248...    29   3.6  
01_01_0206 - 1770622-1771347                                           29   3.6  
09_04_0727 + 19765175-19765384,19765523-19765595,19766476-197665...    28   8.3  
07_03_0163 + 14588041-14588266,14588835-14589001,14589880-145900...    28   8.3  

>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
            18577344-18577458,18578179-18578333,18578673-18580621,
            18580691-18581372,18581550-18581621,18582558-18583199,
            18583301-18583402,18585011-18585100
          Length = 2192

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 580  PRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHT 440
            P  P T  H I  S +DD+     R  VR   +P+N ++ +  S +T
Sbjct: 2064 PEPPETGTHRIEFSAVDDMDTGSCRSPVRDTPDPDNQKSELSGSGNT 2110


>12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638
          Length = 504

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/73 (32%), Positives = 33/73 (45%)
 Frame = -1

Query: 457 EHSHHTVDTGLDQPIESHRNTRDLRFLYPRGKLPVPTLPPFNPKPIYIDMGNRYRRHASE 278
           + S  TVDT L        N ++L FL  RG  P P  PP  P P+ +   +     A+ 
Sbjct: 137 DSSRDTVDTWLRSAAVD--NLQELEFLSNRGGAPPPPSPP-PPPPVSLFRFSYTLHIATI 193

Query: 277 DQEELRHYDEHFL 239
            + EL+H   H L
Sbjct: 194 SRCELQHTTVHEL 206


>01_05_0560 - 23288078-23288370,23288448-23288733
          Length = 192

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = -1

Query: 583 VPRAPSTADHPILPSKIDDVQLDPNRRYVRS 491
           +PR P  A H +L S  DDV  DP+ RYV S
Sbjct: 120 LPR-PLRAGHYVLSSPPDDVDHDPDHRYVFS 149


>04_04_0766 -
           27923120-27923554,27923843-27924580,27924815-27924874,
           27925281-27925328
          Length = 426

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = -3

Query: 671 LQATANTAPDNTYSATSWPGTAMAVSR*QCSSCAKYCRPSDSSFENRRRAARS 513
           L  T++ APD   +A +     + V+    SS    CRPS SSF   +R A S
Sbjct: 154 LVPTSSPAPDQAPAAEATDVDDVVVAALDSSSIDGSCRPSPSSFVAWKRTADS 206


>01_01_0206 - 1770622-1771347
          Length = 241

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -1

Query: 379 LYPRGKL-PVPTLPPFNPKP 323
           L+  GKL PVP LPP +PKP
Sbjct: 68  LFAGGKLLPVPPLPPVHPKP 87


>09_04_0727 + 19765175-19765384,19765523-19765595,19766476-19766570,
            19766666-19768450,19768533-19768721,19768816-19768958,
            19769075-19769320,19769975-19770059,19770117-19770191,
            19770304-19770369,19770466-19770712,19770824-19771242
          Length = 1210

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 355  VPTLPPFNPKPIYIDMGNRYRRHASED-QEELRHYDEHFL 239
            +P LP  NP+P+  D G      AS+D  E+L      F+
Sbjct: 1119 LPELPELNPEPMVTDNGENAAMPASDDIPEQLEVVKRRFM 1158


>07_03_0163 +
           14588041-14588266,14588835-14589001,14589880-14590068,
           14590193-14590315,14590531-14590793,14590882-14590976,
           14591529-14591965,14592461-14592481
          Length = 506

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 517 DPNRRYVRSVTNPENNEASIEHSHHTVDTGLDQPIESH-RNTRDLRFLYPRGKL 359
           DP+   + +++ P+   A   HS    D GL +PIE++    RD   ++ R +L
Sbjct: 151 DPSAS-IENLSQPKRPRAEFSHSDIIGDPGLHKPIEAYPPEIRDQSIVFERMQL 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,415,923
Number of Sequences: 37544
Number of extensions: 451494
Number of successful extensions: 1331
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)