Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0104
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical ...    31   0.74 
At5g61240.1 68418.m07681 leucine-rich repeat family protein cont...    31   0.98 
At5g48385.1 68418.m05980 expressed protein                             29   2.3  
At2g07880.1 68415.m01007 hypothetical protein                          29   2.3  
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam...    29   3.0  
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam...    29   3.0  
At1g28420.1 68414.m03494 homeobox transcription factor, putative...    29   3.0  
At3g57420.1 68416.m06393 expressed protein contains Pfam domain ...    27   9.1  

>At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical to
           DNA polymerase lambda GI:12053869 from [Arabidopsis
           thaliana]
          Length = 529

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = -1

Query: 607 LWLYQG-DNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDT 431
           L LYQ  ++   +   A+  +   KID  ++D  ++ + +++  E+  +  + + ++ D 
Sbjct: 86  LMLYQWLEDSLTSGEKANEDLYVLKIDSEEVDKPKKSLPAISGSEDQSSPQKRTRYSPDA 145

Query: 430 GLDQPIESHRNTR 392
           G  + +ESH NT+
Sbjct: 146 GDFKGVESHSNTQ 158


>At5g61240.1 68418.m07681 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-0B
           [Lycopersicon esculentum] gi|3894387|gb|AAC78593
          Length = 380

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 269 FLILRRMSSVTVSHINIYWLGVKRRKRWNR 358
           +L    MSS  + H+NIY + + R  RWN+
Sbjct: 157 YLCHHNMSSFQILHLNIYSVVITRNLRWNK 186


>At5g48385.1 68418.m05980 expressed protein
          Length = 558

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +1

Query: 367 LEGTKTAGPLCYGGSRSAGQVQYQLYDVNVQWTPRYFLDW*HCE-HTFGLDRAARRRFSK 543
           +E T++   L    S    Q+Q    ++  Q      L W   E H  GL+R+ +RRF +
Sbjct: 1   MEDTRSVASLMDSTSSKIQQLQKAFAELESQRAVTLNLKWKELEEHFHGLERSLKRRFHE 60

Query: 544 EESDGLQY 567
            E    +Y
Sbjct: 61  LEDQEKEY 68


>At2g07880.1 68415.m01007 hypothetical protein
          Length = 173

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/62 (33%), Positives = 27/62 (43%)
 Frame = -1

Query: 460 IEHSHHTVDTGLDQPIESHRNTRDLRFLYPRGKLPVPTLPPFNPKPIYIDMGNRYRRHAS 281
           +E+ HH     LDQ +  H     L F  P    P   LPP + +PI +  G R   H S
Sbjct: 63  VEYHHHH---SLDQSLYQHGRVPPLSFTRPITLPPSRVLPPPSTRPITLPHG-RVPYHHS 118

Query: 280 ED 275
            D
Sbjct: 119 LD 120


>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
           profile: PF00628 PHD-finger
          Length = 482

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = -1

Query: 616 QEPLWLYQGDNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTV 437
           Q P     GD    A  TADH IL + I        + +  +VT+  N++ ++ HS    
Sbjct: 275 QAPTVTQNGDGSSTASGTADHSILNADI------TTQVHTLTVTSSSNSQQAVSHSEVAK 328

Query: 436 DTGLDQPIES 407
            T    P+E+
Sbjct: 329 ATEDAAPLEN 338


>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
           profile: PF00628 PHD-finger
          Length = 743

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = -1

Query: 616 QEPLWLYQGDNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTV 437
           Q P     GD    A  TADH IL + I        + +  +VT+  N++ ++ HS    
Sbjct: 536 QAPTVTQNGDGSSTASGTADHSILNADI------TTQVHTLTVTSSSNSQQAVSHSEVAK 589

Query: 436 DTGLDQPIES 407
            T    P+E+
Sbjct: 590 ATEDAAPLEN 599


>At1g28420.1 68414.m03494 homeobox transcription factor, putative
           similar to homeobox transcription factor Hox7 GI:19486
           [Lycopersicon peruvianum]
          Length = 1703

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 229 PSESESAHHNAAILLDPPTHVVGNGFPY 312
           PS  ESAHH    LL+  + V+G   PY
Sbjct: 318 PSPIESAHHGDRFLLEKDSSVLGTEDPY 345


>At3g57420.1 68416.m06393 expressed protein contains Pfam domain
           PF03385: Protein of unknown function, DUF288
          Length = 765

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 549 FFLRKSTTCSSIQTEGMFAVSPIQKITRRPLNIHIIQLILDLTS 418
           FFL  +T  +S+      +   +Q +TR  +N + IQ++ D TS
Sbjct: 58  FFLYNTTDTASLLCFQSQSTQSLQSLTRPQINWNSIQIVSDKTS 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,487,016
Number of Sequences: 28952
Number of extensions: 351193
Number of successful extensions: 997
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)