Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0103
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0764 - 31804811-31804915,31805013-31805072,31805720-318059...    44   1e-04
07_03_0674 + 20598668-20598774,20599456-20600467                       30   1.4  
08_02_0822 + 21549257-21550729,21550776-21550877                       29   3.2  
08_02_0318 + 15710834-15711775                                         29   4.2  
07_03_1345 + 25919379-25920866,25921342-25921962,25922733-259228...    27   9.8  
05_03_0387 + 13396158-13396271,13396390-13396434,13397004-133976...    27   9.8  

>01_06_0764 -
           31804811-31804915,31805013-31805072,31805720-31805959,
           31807367-31807525,31807653-31807769
          Length = 226

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 5/173 (2%)
 Frame = +3

Query: 135 IRSDIEEINDLLKQAKRKKVQDLLSLEIRXXXXXXXXXXXXXXXXPMEV-SPIPTTSTSA 311
           +R D+EE+  L   AKR +V   L+ EIR                 +   SP    + +A
Sbjct: 6   LRLDLEELRRLEGLAKRPRVLSALANEIRAVDAKLAKATEPQAPQAVAAGSPPVVAAAAA 65

Query: 312 PVQKK----YQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLE 479
           P          V L  + WDQ  + +K++V L+ V    +++V       S++    +++
Sbjct: 66  PAPAAAAGVSYVTLGSFSWDQDAEKIKIYVFLEGVE---QDKVETTFKPMSVDTKFHDVK 122

Query: 480 NKDYLLVINKLLEPINVADSHWKQKTDKVVIFLAKSNPNTTWSHMTEIEKKFE 638
            K+Y   I KL + I         K  K+++ L K++    W  +   E KF+
Sbjct: 123 GKNYRCAIPKLHKEIVPEKCKVLVKPTKIIVTLYKASKG-NWLDLHFKEDKFK 174


>07_03_0674 + 20598668-20598774,20599456-20600467
          Length = 372

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 270 PMEVSPIPTTSTSAPVQKKYQVKLNVYGWDQSDKFVKVFV-ELKNVHTLPKEQVYCKLTD 446
           P +VSP P      P++K  + K ++Y       FVK  + ++ N H    E ++ +L+ 
Sbjct: 220 PPQVSPTPAIDVLLPIEKAQKAKRDIYA---VSYFVKAGLGKVLNPHKERMENLFKRLSP 276

Query: 447 KSMELHV 467
            + EL+V
Sbjct: 277 WAPELYV 283


>08_02_0822 + 21549257-21550729,21550776-21550877
          Length = 524

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/41 (24%), Positives = 28/41 (68%)
 Frame = +3

Query: 441 TDKSMELHVDNLENKDYLLVINKLLEPINVADSHWKQKTDK 563
           ++K +E++ D  +NK+ ++++ ++ E +N+ +SH +  T +
Sbjct: 438 SEKMVEMN-DTRKNKEQIIMLKEVYEQLNMIESHMRPSTSQ 477


>08_02_0318 + 15710834-15711775
          Length = 313

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -2

Query: 303 YLLWVLVILPWASKFPFLLMLLVLSQVF*SPRRVNPVLSYV 181
           Y L  LV++P     P  ++ L LS V+ +PRR +PV +++
Sbjct: 228 YALAALVVVP----LPVQVVALALSSVWETPRRTSPVAAFL 264


>07_03_1345 +
           25919379-25920866,25921342-25921962,25922733-25922893,
           25923284-25923422,25923509-25923592,25923944-25923982,
           25924037-25924222,25924347-25924478,25924810-25925009,
           25925294-25925498,25925618-25925944
          Length = 1193

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -2

Query: 627 FQFQSYETMLCLD*ILQGI*LPYLFFVSNDCLPHL*VPITC**QASNLYFPDCPHAAPLI 448
           F+ +     LCLD +L+   L   F   +  L  L V ++C  +A+ L   +CP + P  
Sbjct: 366 FRVREPHDFLCLDQVLE---LFLQFPGCSSLLQELIVALSCMCKAAPLVLTECPFSGPYP 422

Query: 447 YLSI 436
           +L++
Sbjct: 423 FLAL 426


>05_03_0387 +
           13396158-13396271,13396390-13396434,13397004-13397632,
           13397727-13397874,13397971-13398147,13398527-13398595,
           13398699-13398788,13399000-13399158,13399663-13399753,
           13399917-13400008,13400009-13400233,13400394-13400585
          Length = 676

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +3

Query: 270 PMEVSPIPTTSTSAPVQKKYQVK-LNVYGWDQSDKFVK---VFVELKNVHTLPKEQVYCK 437
           P  ++ +    +  P   K QVK LN  G + + + +    VF+ELKN   L +   +C+
Sbjct: 467 PSYLAKVQWDESFGPKMDKLQVKGLNHGGIESAKQALNESGVFLELKNALNLWRPLTFCR 526

Query: 438 LT 443
           LT
Sbjct: 527 LT 528


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,502,485
Number of Sequences: 37544
Number of extensions: 283801
Number of successful extensions: 619
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)