Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0103
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30070.1 68414.m03676 SGS domain-containing protein similar t...    58   5e-09
At5g58740.1 68418.m07358 nuclear movement family protein contain...    38   0.004
At1g80910.1 68414.m09493 expressed protein                             29   2.7  
At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containi...    29   3.5  
At2g44410.1 68415.m05523 expressed protein                             28   6.2  
At5g45260.1 68418.m05555 disease resistance protein (TIR-NBS-LRR...    27   8.2  
At4g08570.1 68417.m01409 heavy-metal-associated domain-containin...    27   8.2  
At1g47300.1 68414.m05237 F-box family protein similar to hypothe...    27   8.2  

>At1g30070.1 68414.m03676 SGS domain-containing protein similar to
           calcyclin binding protein [Mus musculus] GI:3142331;
           contains Pfam profile PF05002: SGS domain
          Length = 222

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 3/168 (1%)
 Frame = +3

Query: 144 DIEEINDLLKQAKRKKVQDLLSLEIRXXXXXXXXXXXXXXXXPMEVS-PIPTTSTSAPVQ 320
           D+EE+  L   AKR +V +L++ EI                  + V+ P P +S+  PV 
Sbjct: 8   DLEELRQLQNIAKRPRVLNLINSEISNLEKLRDSAVSSNAKPKVPVTVPAPVSSSGKPVS 67

Query: 321 KK--YQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYL 494
                 V L  + WDQ +  VK+++ L+ V    +++V  +    S+++ + +++ K+Y 
Sbjct: 68  SSALNYVTLGTFSWDQDNDKVKMYISLEGV---DEDKVQAEFKPMSLDIKIHDVQGKNYR 124

Query: 495 LVINKLLEPINVADSHWKQKTDKVVIFLAKSNPNTTWSHMTEIEKKFE 638
             I KL + I         K  ++VI + KS+    W  +   E K +
Sbjct: 125 CAIPKLCKEIMPEKCKVLVKPKRIVITMVKSS-RGNWLDIHHKEDKIK 171


>At5g58740.1 68418.m07358 nuclear movement family protein contains
           Pfam profile: PF03593 nuclear movement protein
          Length = 158

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = +3

Query: 345 VYGWDQSDKFVKVFVELK-NVHTLPKEQVYCKLTDKSMELHVDNLENKDYLLVINKLLEP 521
           V+ WDQ+ + V +++ L  NVH  PK   +CK+  K +E+ +    N  YL   + L  P
Sbjct: 20  VFEWDQTLEEVNMYITLPPNVH--PKS-FHCKIQSKHIEVGIKG--NPPYLN--HDLSAP 72

Query: 522 INVADSHWKQKTDKVVIFLAKSNPNTTWS 608
           +    S W  + D + I L K     TW+
Sbjct: 73  VKTDCSFWTLEDDIMHITLQKREKGQTWA 101


>At1g80910.1 68414.m09493 expressed protein
          Length = 497

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 483 KDYLLVINKLLEPINVADSHWKQKTDKVVIFLAKSNPNTTW 605
           K+ LL +NKL E ++   +  KQ+ D  +   AK+N   TW
Sbjct: 416 KESLLALNKLREEVDTEKNRSKQEKDMEICIRAKNN---TW 453


>At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587, post-transcriptional control of
           chloroplast gene expression CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 918

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 327 YQVKLNVYGWD-QSDKFVKVFVELKNVHTLPKEQVYCKLTD 446
           Y   L  YG   + D+  KVF E+K  H LP    Y  L D
Sbjct: 482 YNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLID 522


>At2g44410.1 68415.m05523 expressed protein 
          Length = 413

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 567 LPYLFFVSNDCLPHL*VPI-TC**QASNLYFPDCPHAAPLIYLSIYNIPV 421
           +P  FF  N CL     PI TC     +L+   C +  PLIYL+I   PV
Sbjct: 118 VPGGFFDCNICLEKAEDPILTC---CGHLFCWGCFYQLPLIYLNIKECPV 164


>At5g45260.1 68418.m05555 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1187

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 39  LHSIQTNCSFIKMSEAKIQEVLITHHYIQ*INIRSDIEEINDLLKQ 176
           +H  +  CS   + E  +++V  TH Y+  I I S + EI +++ +
Sbjct: 122 IHQSRKECSDSILVEEIVRDVYETHFYVGRIGIYSKLLEIENMVNK 167


>At4g08570.1 68417.m01409 heavy-metal-associated domain-containing
           protein / copper chaperone (CCH)-related low similarity
           to copper homeostasis factor [GI:3168840][PMID:9701579];
           similar to farnesylated proteins GMFP7 [Glycine
           max][GI:4097573] and ATFP7 [GI:4097555]; contains
           heavy-metal-associated domain PF00403
          Length = 150

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 129 INIRSDIEEINDLLKQAKRKKVQDLLSLEIR 221
           + +   +E I+DLLK+ KRKK + + ++ +R
Sbjct: 1   MGVEGTMEYISDLLKKRKRKKKKQMQTVALR 31


>At1g47300.1 68414.m05237 F-box family protein similar to
           hypothetical protein GB:AAD22295 GI:4544385 from
           [Arabidopsis thaliana]
          Length = 306

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +3

Query: 282 SPIPTTSTSAPVQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVY 431
           +PI     S P  K+Y+ +L+ +G+D  DK  K +  LK  ++L  ++ +
Sbjct: 134 NPITGRYASLPYLKRYRKELSFFGFDPIDKQFKEW--LKYAYSLRDDKFF 181


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,087,422
Number of Sequences: 28952
Number of extensions: 250163
Number of successful extensions: 675
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)