Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0102
         (583 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7693| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09)                  31   0.69 
SB_57787| Best HMM Match : JTB (HMM E-Value=5.2)                       29   2.1  
SB_51948| Best HMM Match : Cation_efflux (HMM E-Value=0.58)            28   6.4  
SB_24110| Best HMM Match : Metallothionein (HMM E-Value=1.9)           28   6.4  

>SB_7693| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09)
          Length = 688

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 453 PPVSAPRKLLSRPLVSVYNSVSQPCL 530
           P + APR L+ + LVS+Y S S PC+
Sbjct: 663 PCMQAPRSLVYKHLVSLYTSTSFPCI 688



 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 453 PPVSAPRKLLSRPLVSVYNSVSQPCL 530
           P + APR  + + LV +Y S S PC+
Sbjct: 434 PCIQAPRSFVCKHLVPMYTSTSFPCI 459



 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 453 PPVSAPRKLLSRPLVSVYNSVSQPCLCYAPL*YFYNVYAP 572
           P + APR L+ + LV +Y S S PC+  AP    Y    P
Sbjct: 526 PCMQAPRSLVYKHLVPLYASTSFPCM-QAPRSLVYKHLVP 564



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 453 PPVSAPRKLLSRPLVSVYNSVSQPCLCYAPL*YFYNVYAP-YT 578
           P + APR  + + LV +Y S S PC+  AP    Y    P YT
Sbjct: 370 PCMEAPRSFVYKHLVPLYTSTSFPCI-QAPRSLVYKHLVPLYT 411



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 453 PPVSAPRKLLSRPLVSVYNSVSQPCL 530
           P + APR L+ + LV +Y S S PC+
Sbjct: 549 PCMQAPRSLVYKHLVPMYASTSFPCM 574


>SB_57787| Best HMM Match : JTB (HMM E-Value=5.2)
          Length = 233

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 570 GHKHYRNITVGHSTNKVGKHCYRRIQEAWTT 478
           GH HY+ +    +T  VG H Y+++ +  TT
Sbjct: 133 GHHHYQQVLDITTTTSVGHHHYKKVLDITTT 163



 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 570 GHKHYRNITVGHSTNKVGKHCYRRIQEAWTT 478
           GH HY+ +    +T  VG H Y+++ +  TT
Sbjct: 30  GHHHYKKVLDITTTVSVGHHHYKKVLDITTT 60



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 570 GHKHYRNITVGHSTNKVGKHCYRRIQEAWTT 478
           GH HY+ +    +T  VG H Y+++ +  TT
Sbjct: 90  GHHHYQQVLDITTTISVGHHHYKKVLDITTT 120



 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 570 GHKHYRNITVGHSTNKVGKHCYRRIQEAWTT 478
           GH HY+ +    +T  VG H Y+++ +  TT
Sbjct: 176 GHYHYQQVLDITTTISVGHHHYKKVLDITTT 206


>SB_51948| Best HMM Match : Cation_efflux (HMM E-Value=0.58)
          Length = 262

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +2

Query: 65  FMVTIVLPSSCIIMFNSIVILYIFQFCYMNIKVCFIQAEYLDYEKHPRC 211
           F+  +++ ++CI++F+++   ++     + I V F   EY D E+HP C
Sbjct: 58  FLNRLMVTAACIVLFSAV---FLTALALVLIYVRF--NEYYDPEEHPAC 101


>SB_24110| Best HMM Match : Metallothionein (HMM E-Value=1.9)
          Length = 237

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 125 LYIFQFCYMNIKVCFIQAEYLDYE 196
           +Y+ ++C   +K C  Q EY  Y+
Sbjct: 92  MYLVEYCMCQVKYCMCQVEYCMYQ 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,880,645
Number of Sequences: 59808
Number of extensions: 346849
Number of successful extensions: 979
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)