Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0102
         (583 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78950.1 68414.m09204 beta-amyrin synthase, putative similar ...    29   3.0  
At4g13130.1 68417.m02045 DC1 domain-containing protein contains ...    27   6.9  
At3g06150.1 68416.m00707 expressed protein                             27   6.9  
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ...    27   9.1  

>At1g78950.1 68414.m09204 beta-amyrin synthase, putative similar to
           beta-Amyrin Synthase GI:3688600 from [Panax ginseng] and
           GI:8918271 from [Pisum sativum]
          Length = 759

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 582 IMYRGHKHYRNITVGHSTNKVGKHCYRRIQE-AWTTIFEEH 463
           ++ RGH+  +N  VG + +   K  YR I + AWT    +H
Sbjct: 440 VLRRGHEFIKNSQVGENPSGDYKSMYRHISKGAWTFSDRDH 480


>At4g13130.1 68417.m02045 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 767

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 484 PGLLYPSITVFPNLVCAMPHCNISIMFMPP 573
           P +L+PS   FP  +CA+ H +      PP
Sbjct: 322 PLILFPSQASFPCNLCALTHSSCPFYICPP 351


>At3g06150.1 68416.m00707 expressed protein 
          Length = 594

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
 Frame = +1

Query: 70  GYHSFTVIVHYNV*FNSNFIYISVLLHEH-KGL-FHTSRVS*LRKASEV---FVKTP 225
           G +SF++ VH    F  +F    +LL  H +GL F TSR+   RK   V   FVKTP
Sbjct: 211 GTYSFSLQVHPE--FAGDFNLTVILLFRHYQGLKFSTSRLGFDRKLRNVRLRFVKTP 265


>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 541

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 487 GLLYPSITVFPNLVCAMPHCN 549
           GL+YP + V PN     P CN
Sbjct: 488 GLVYPGLEVLPNNGATRPFCN 508


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,228,972
Number of Sequences: 28952
Number of extensions: 233679
Number of successful extensions: 537
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)