Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0101
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    27   1.7  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    27   2.2  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   5.2  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   6.8  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   9.0  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    25   9.0  

>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = -1

Query: 247 SQKKVKFGNFEFFNMLSFL*LKGVKN-RIAILKKKKSHLCIW 125
           +++++++ N  FF+ +  L L  + N R+AIL+   + LCIW
Sbjct: 369 AKQQMQYTNNLFFDDMMLL-LSNLSNARVAILEGYSNRLCIW 409


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 138 WLFFFLSMAILFFTPFN*RKDNILKNSKLPNLTFFCELPFAIRE 269
           WLF FL+ A++     N     +L  + +P++TFFC L   + E
Sbjct: 108 WLFKFLASALVLLLRPNYTMFPML--NVVPSITFFCSLVCLLAE 149



 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 175 KNRIAILKKKKSHLCIWKILVI 110
           KN I+  KKKKS L +W +L +
Sbjct: 226 KNWISHAKKKKSSLYMWGVLFL 247


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 357 VPINLFKLNKLTLTILF*LYFVLT 286
           VP+N F++N++   +LF LY V T
Sbjct: 708 VPLNRFRVNRVLGLLLFILYIVGT 731


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = -1

Query: 232 KFGNFEFFNMLSF----L*LKGVKNRIAILKKKKSHLCIW--KILVIFFYL 98
           KF    FF  LSF    L L  +K  +  +    SHLCIW  KIL+   Y+
Sbjct: 667 KFTESYFFLSLSFRDPILVLSTMKPYLCNITFLGSHLCIWQPKILLGIMYV 717


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 454 DNKEWYLKELFWFQFC 407
           DN E+ LK+L W Q C
Sbjct: 63  DNNEFALKDLTWLQNC 78


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 85  CLYISNKKK*LIFSKYISGSFFF*VWQFYFLHLLIKEKITY 207
           CL    KK  + F  ++SG+FF  V   + L  + K +  Y
Sbjct: 336 CLLNYEKKFHVAFDAHVSGTFFGVVSSLFLLPAMWKRRSLY 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,092,981
Number of Sequences: 5004
Number of extensions: 41518
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)