Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0101
         (523 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53869| Best HMM Match : ABC_membrane (HMM E-Value=0.34)             30   1.3  
SB_43683| Best HMM Match : RVT_1 (HMM E-Value=0.024)                   28   5.4  
SB_42298| Best HMM Match : Polyoma_agno (HMM E-Value=8.2)              27   7.1  

>SB_53869| Best HMM Match : ABC_membrane (HMM E-Value=0.34)
          Length = 403

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +3

Query: 195 KDNILKNSKLPNLTFFCELPFAIREALQFCE*--EQNIIKTKLLKLVYLI*INLLEPLPK 368
           K N ++N++ P++     L F+ +E    C      ++ KT +  L+Y +   LLEP P+
Sbjct: 160 KANAVRNARKPSMWKALFLMFSFQEYATLCTLMLTYSVTKTAIPYLLYCVLKKLLEPSPQ 219

Query: 369 T 371
           T
Sbjct: 220 T 220


>SB_43683| Best HMM Match : RVT_1 (HMM E-Value=0.024)
          Length = 474

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 133 ISGSFFF*VWQFYFLHLLIKEKITY*KTRNC 225
           IS S FF +W+ +F H+LI ++  + K  +C
Sbjct: 430 ISLSHFFCLWEQHFSHVLIHKENRFTKCNDC 460


>SB_42298| Best HMM Match : Polyoma_agno (HMM E-Value=8.2)
          Length = 327

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
 Frame = -2

Query: 477 KYRIVAPMTT--KNGI*KNYSGFNFVSCYTIRYNLDSLFSGAVPINLFK--LN-KLTLTI 313
           KYRI   M     NG+ +++   N   C+T+R N   L   A    L K  L+ ++ + +
Sbjct: 134 KYRIKVWMCADASNGLLEHFEAHNTFVCWTVRVNRKDLRKSAKKKLLSKKVLSLQIVILL 193

Query: 312 LF*LYFVLTRKTA------MLRE-WQKVIRKK 238
           L  +Y +L  +         LR+ W+K IRK+
Sbjct: 194 LIIVYLLLLHERCEMASDFKLRQWWEKKIRKE 225


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,106,934
Number of Sequences: 59808
Number of extensions: 250973
Number of successful extensions: 365
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)