Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0100
(606 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 242 3e-65
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 101 6e-23
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 85 8e-18
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 81 2e-16
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 68 9e-13
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 57 2e-09
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 47 2e-06
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 43 4e-05
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 42 7e-05
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 41 1e-04
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 36 0.003
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 35 0.008
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 35 0.011
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 31 0.099
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.8
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 2.8
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 3.7
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 26 4.9
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 26 4.9
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac... 25 8.6
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 25 8.6
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 25 8.6
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 242 bits (592), Expect = 3e-65
Identities = 115/167 (68%), Positives = 136/167 (81%)
Frame = +3
Query: 105 EGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVV 284
E YY KI++ +L + +K+QNLRRL+AQRN LNA+VR+LR GSYVGEV+
Sbjct: 14 ENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVI 73
Query: 285 KPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSL 464
K M K KVLVKVHPEGK+VVD+ ++DI ++ N RVALRN+SY L KILPNKVDPLVSL
Sbjct: 74 KTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSL 133
Query: 465 MMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
MMVEK+PDSTYEMVGGL+KQIKEIKEVIELPVKHPELF++LGI QPK
Sbjct: 134 MMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPK 180
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 101 bits (243), Expect = 6e-23
Identities = 50/115 (43%), Positives = 76/115 (66%)
Frame = +3
Query: 261 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPN 440
G +GEV+K +D ++ +VK ++VV NVD + + RV+L + T+ +ILP
Sbjct: 53 GQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPR 112
Query: 441 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
+VDPLV M +E D ++ VGGL++QI+E++EVIELP+K+PELF +GI PK
Sbjct: 113 EVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPK 167
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 85.0 bits (201), Expect = 8e-18
Identities = 42/104 (40%), Positives = 59/104 (56%)
Frame = +3
Query: 294 DKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMV 473
+K ++ + KFVV L + V D+ RV Y + LP K+DP V++M V
Sbjct: 111 EKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQV 170
Query: 474 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
E+ PD TY VGG +QI+ ++EV+ELP+ PE F LGI PK
Sbjct: 171 EEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPK 214
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 80.6 bits (190), Expect = 2e-16
Identities = 46/158 (29%), Positives = 84/158 (53%)
Frame = +3
Query: 132 KIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 311
+I + L+ E QN RL+ Q + + G+ + E++ D ++
Sbjct: 74 RIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVGT-LEEIID--DDHAIV 130
Query: 312 VKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDS 491
PE + V + VD + + C V L +++ ++ +L + DP++++M ++K P
Sbjct: 131 STAGPE--YYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTE 188
Query: 492 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
+Y +GGL+ QI+EIKE +ELP+ HPEL++ +GI PK
Sbjct: 189 SYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPK 226
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 68.1 bits (159), Expect = 9e-13
Identities = 34/112 (30%), Positives = 63/112 (56%)
Frame = +3
Query: 270 VGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVD 449
+G+ ++ +D+ +V +VV + +D + + VAL+ S L ILP + D
Sbjct: 58 IGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEAD 117
Query: 450 PLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
+S++ ++ PD +Y VGGLD Q +E++E +ELP+ +L+ +GI P+
Sbjct: 118 SSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPR 169
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 56.8 bits (131), Expect = 2e-09
Identities = 30/102 (29%), Positives = 51/102 (50%)
Frame = +3
Query: 300 KKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEK 479
K ++K + L V+ ++ + + +SY + LP++ D V M V++
Sbjct: 119 KSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDE 178
Query: 480 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
P Y +GGL KQI+E+ E I LP++ + F LG+ PK
Sbjct: 179 KPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPK 220
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 47.2 bits (107), Expect = 2e-06
Identities = 16/37 (43%), Positives = 30/37 (81%)
Frame = +3
Query: 495 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
Y+ +GG +Q+ +I+E++ELP++HP+LF ++GI P+
Sbjct: 223 YDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPR 259
Score = 41.1 bits (92), Expect = 1e-04
Identities = 29/113 (25%), Positives = 58/113 (51%)
Frame = +3
Query: 267 YVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKV 446
YVG + + + + ++ E ++DLD++ +V + V + N + L P+ +
Sbjct: 426 YVGSDLASLCSEAAMQQIR-EKMDMIDLDEDEIDAEVLDSLGVTMDNFRFALGSSNPSAL 484
Query: 447 DPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
V VE VP+ +E +GGL++ +E++E +++PV + E F G+ K
Sbjct: 485 RETV----VE-VPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSK 532
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 42.7 bits (96), Expect = 4e-05
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +3
Query: 492 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
T+ +GGL QI +I++++ELP ++PELF I P+
Sbjct: 277 TFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPR 314
Score = 35.1 bits (77), Expect = 0.008
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 483 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
P+ + +GG ++ +++KE +E P+ H E F LG+ PK
Sbjct: 543 PNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPK 583
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 41.9 bits (94), Expect = 7e-05
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +3
Query: 474 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
E D + +GGLD I E+ E++ +P+KHPE++ GI P+
Sbjct: 166 EPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPR 209
Score = 33.9 bits (74), Expect = 0.019
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 441 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP 602
KV P VP ++ +G L E++ I P+K PEL+ ++GI+ P
Sbjct: 473 KVQPSSKREGFATVPGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAP 526
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 41.1 bits (92), Expect = 1e-04
Identities = 15/38 (39%), Positives = 26/38 (68%)
Frame = +3
Query: 492 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
++E VGGLD I ++KE++ LP+ +PE+F + P+
Sbjct: 264 SFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPR 301
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 36.3 bits (80), Expect = 0.003
Identities = 14/52 (26%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = +3
Query: 438 NKVDPLV-SLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALG 590
N+ + +V S +++ D +++ +GG+D+ + ++ + + P+K+PE+FD G
Sbjct: 68 NEYEQIVASQLVLPSEIDVSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHG 119
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 35.1 bits (77), Expect = 0.008
Identities = 16/42 (38%), Positives = 28/42 (66%)
Frame = +3
Query: 453 LVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF 578
L S ++VEK P+ ++ + GL+ + +KE + LP+K P+LF
Sbjct: 115 LTSAILVEK-PNVRWDDIAGLENAKEALKETVLLPIKLPQLF 155
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 34.7 bits (76), Expect = 0.011
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +3
Query: 495 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
+ +GGL+ I ++KE++ LP+ +PE+F L I P+
Sbjct: 371 FNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPR 407
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 31.5 bits (68), Expect = 0.099
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = +3
Query: 480 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF 578
VP ++ +GGL++ +++ ++LP++ PELF
Sbjct: 649 VPKVNWDDIGGLEEAKTVLRDTLQLPLQFPELF 681
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 483 PDSTYEMVGGLDKQIKEIKEV 545
P +YE++ GLDKQ + K+V
Sbjct: 18 PKESYELLHGLDKQYQSTKDV 38
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 376 TSLISTFLSKSTTNLPSG*TFTRTFFLSIGLTT 278
TS+IS+ S S T++PS + +FF + G T+
Sbjct: 822 TSIISSIASSSYTSIPSISSIASSFFDASGFTS 854
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 504 VGGLDKQIKEIKEVIELPVKHPELFDAL 587
+ GLD +KE + P PELF L
Sbjct: 381 IAGLDDAKNSLKEAVIYPFLRPELFQGL 408
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 138 EELQLIVAEKSQNLRRLQAQ 197
EEL+LI K ++ RRLQAQ
Sbjct: 275 EELELIAERKRESGRRLQAQ 294
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 428 NTTQQSRSSCVAHDGRESAGLYLRNGRWSRQTNQGD 535
N+T + SS A+ +S+G ++ NG+ + + G+
Sbjct: 233 NSTSKVMSSASANKPSKSSGFHINNGKSKEEKSHGE 268
>SPCC4G3.08 |psk1||serine/threonine protein kinase
Psk1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 436
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -2
Query: 221 NFSVEFITLGLKTTKIL 171
NFSVEF L L TT IL
Sbjct: 379 NFSVEFTKLPLSTTPIL 395
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 465 MMVEKVPDSTYEMVGGLDKQIKEI 536
++V+ V D+T E+VG Q+KEI
Sbjct: 59 LLVQAVQDATPELVGSSLTQLKEI 82
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 25.0 bits (52), Expect = 8.6
Identities = 7/26 (26%), Positives = 18/26 (69%)
Frame = +3
Query: 474 EKVPDSTYEMVGGLDKQIKEIKEVIE 551
+ +P+S + MVG +D +K+ +++ +
Sbjct: 496 DSLPESAFYMVGSIDDAVKKAEKIAQ 521
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,297,940
Number of Sequences: 5004
Number of extensions: 44130
Number of successful extensions: 153
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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