Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0100
(606 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 248 2e-66
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 247 5e-66
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 97 1e-20
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 96 1e-20
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 93 1e-19
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 89 2e-18
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 89 2e-18
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 89 2e-18
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 66 2e-11
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 64 5e-11
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 64 5e-11
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 54 7e-08
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 52 2e-07
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 52 2e-07
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 41 7e-04
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 36 0.016
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 36 0.021
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 36 0.028
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 36 0.028
At1g08270.2 68414.m00912 expressed protein low similarity to SP|... 34 0.064
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 34 0.084
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 34 0.084
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 34 0.084
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 33 0.15
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 32 0.26
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 32 0.26
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 32 0.26
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 31 0.59
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 31 0.59
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 31 0.59
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 30 1.0
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 30 1.4
At1g60700.1 68414.m06833 forkhead-associated domain-containing p... 30 1.4
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 30 1.4
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 29 1.8
At1g08270.1 68414.m00913 expressed protein low similarity to SP|... 29 1.8
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 29 2.4
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 29 2.4
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 29 2.4
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 29 2.4
At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR... 29 3.2
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 28 4.2
At4g38870.1 68417.m05504 F-box family protein contains Pfam prof... 28 5.5
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 28 5.5
At3g29185.2 68416.m03659 expressed protein 27 7.3
At3g29185.1 68416.m03658 expressed protein 27 7.3
At3g24880.1 68416.m03120 expressed protein 27 9.6
At3g07740.2 68416.m00935 transcriptional adaptor (ADA2a) identic... 27 9.6
At3g07740.1 68416.m00936 transcriptional adaptor (ADA2a) identic... 27 9.6
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 248 bits (607), Expect = 2e-66
Identities = 116/169 (68%), Positives = 140/169 (82%)
Frame = +3
Query: 99 KGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGE 278
+GEG YY+ ++ELQ + EKS NL RL+AQRNELN++VRMLR GSYVGE
Sbjct: 28 QGEGLNKYYLQHLDELQRLQREKSYNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGE 87
Query: 279 VVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLV 458
VVK M K KVLVKVHPEGK+VVD+DK++DI +T + RVALRN+SY LH +LP+KVDPLV
Sbjct: 88 VVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLV 147
Query: 459 SLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
+LM VEKVPDSTY+M+GGLD+QIKEIKEVIELP+KHPELF++LGIAQPK
Sbjct: 148 NLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPK 196
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 247 bits (604), Expect = 5e-66
Identities = 115/169 (68%), Positives = 140/169 (82%)
Frame = +3
Query: 99 KGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGE 278
+GEG + YY+ I ELQ + +K+ NL RL+AQRNELN++VRMLR GSYVGE
Sbjct: 28 QGEGLKQYYLQHIHELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGE 87
Query: 279 VVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLV 458
VVK M K KVLVKVHPEGK+VVD+DK++DI +T + RVALRN+SY LH +LP+KVDPLV
Sbjct: 88 VVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLV 147
Query: 459 SLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
+LM VEKVPDSTY+M+GGLD+QIKEIKEVIELP+KHPELF++LGIAQPK
Sbjct: 148 NLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPK 196
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 96.7 bits (230), Expect = 1e-20
Identities = 54/156 (34%), Positives = 89/156 (57%)
Frame = +3
Query: 138 EELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVK 317
+EL+ V +NLR + + N+ ++ L+ G +GEV++P+D ++++VK
Sbjct: 26 KELESRVRTARENLRAAKKEFNKTEDDLKSLQSV-------GQIIGEVLRPLDNERLIVK 78
Query: 318 VHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTY 497
++VV VD +T+ RV L + T+ + LP +VDP+V M+ E + +Y
Sbjct: 79 ASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISY 138
Query: 498 EMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
VGGL QI+E++E IELP+ +PELF +GI PK
Sbjct: 139 SAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPK 174
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 96.3 bits (229), Expect = 1e-20
Identities = 54/156 (34%), Positives = 89/156 (57%)
Frame = +3
Query: 138 EELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVK 317
+EL+ V +NLR + + N+ ++ L+ G +GEV++P+D ++++VK
Sbjct: 26 KELESRVRTARENLRGAKKEFNKTEDDLKSLQSV-------GQIIGEVLRPLDNERLIVK 78
Query: 318 VHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTY 497
++VV VD +T+ RV L + T+ + LP +VDP+V M+ E + +Y
Sbjct: 79 ASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISY 138
Query: 498 EMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
VGGL QI+E++E IELP+ +PELF +GI PK
Sbjct: 139 SAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPK 174
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 93.5 bits (222), Expect = 1e-19
Identities = 45/111 (40%), Positives = 68/111 (61%), Gaps = 1/111 (0%)
Frame = +3
Query: 276 EVVKP-MDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDP 452
+++ P + K +V + GK+VV L D+ A RV + + Y + LP K+DP
Sbjct: 130 QIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDP 189
Query: 453 LVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
V++M VE+ PD+TY +GG +QI++I+EV+ELP+ HPE F LGI PK
Sbjct: 190 SVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPK 240
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 89.4 bits (212), Expect = 2e-18
Identities = 57/181 (31%), Positives = 99/181 (54%)
Frame = +3
Query: 63 MTLTTKMEVDTVKGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXX 242
+T +TK ++ +K E + Y + + E VA + + L+ + + E +KV LR
Sbjct: 55 VTPSTKCKLRLLKLERIKDYLLMEEE----FVANQ-ERLKPQEEKAEEDRSKVDDLRGTP 109
Query: 243 XXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTL 422
VG + + +D+ +V ++ V + VD + + C + + N+ ++
Sbjct: 110 MS-------VGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSV 162
Query: 423 HKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP 602
IL ++VDP+VS+M VEK P +Y +GGL+ QI+EIKE +ELP+ HPEL++ +GI P
Sbjct: 163 VGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPP 222
Query: 603 K 605
K
Sbjct: 223 K 223
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 89.4 bits (212), Expect = 2e-18
Identities = 57/181 (31%), Positives = 99/181 (54%)
Frame = +3
Query: 63 MTLTTKMEVDTVKGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXX 242
+T +TK ++ +K E + Y + + E VA + + L+ + + E +KV LR
Sbjct: 55 VTPSTKCKLRLLKLERIKDYLLMEEE----FVANQ-ERLKPQEEKAEEDRSKVDDLRGTP 109
Query: 243 XXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTL 422
VG + + +D+ +V ++ V + VD + + C + + N+ ++
Sbjct: 110 MS-------VGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSV 162
Query: 423 HKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP 602
IL ++VDP+VS+M VEK P +Y +GGL+ QI+EIKE +ELP+ HPEL++ +GI P
Sbjct: 163 VGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPP 222
Query: 603 K 605
K
Sbjct: 223 K 223
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 89.4 bits (212), Expect = 2e-18
Identities = 45/111 (40%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Frame = +3
Query: 276 EVVKP-MDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDP 452
+++ P + K ++ V KFVV L V D+ RV + Y + LP K+DP
Sbjct: 93 KIISPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDP 152
Query: 453 LVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
V++M VE+ PD TY VGG +QI++++EV+ELP+ HPE F LGI PK
Sbjct: 153 SVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPK 203
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 66.1 bits (154), Expect = 2e-11
Identities = 33/112 (29%), Positives = 60/112 (53%)
Frame = +3
Query: 270 VGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVD 449
+G+ ++ +D+ +V + V + ++ + + VAL S L +LP + D
Sbjct: 79 IGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEAD 138
Query: 450 PLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
+SL+ + PD +Y +GG D Q +EI+E +ELP+ H EL+ +GI P+
Sbjct: 139 SSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPR 190
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 64.5 bits (150), Expect = 5e-11
Identities = 31/82 (37%), Positives = 47/82 (57%)
Frame = +3
Query: 360 VDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIK 539
VD + + V + +SY + LP++ D V M V++ P Y +GGL+KQI+E+
Sbjct: 125 VDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELV 184
Query: 540 EVIELPVKHPELFDALGIAQPK 605
E I LP+ H E F+ LG+ PK
Sbjct: 185 EAIVLPMTHKERFEKLGVRPPK 206
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 64.5 bits (150), Expect = 5e-11
Identities = 32/82 (39%), Positives = 47/82 (57%)
Frame = +3
Query: 360 VDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIK 539
VD + + V + +SY + LP++ D V M V++ P Y +GGL+KQI+E+
Sbjct: 124 VDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELV 183
Query: 540 EVIELPVKHPELFDALGIAQPK 605
E I LP+ H E F+ LGI PK
Sbjct: 184 EAIVLPMTHKEQFEKLGIRPPK 205
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 54.0 bits (124), Expect = 7e-08
Identities = 20/44 (45%), Positives = 35/44 (79%)
Frame = +3
Query: 474 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
E++ D Y+ VGG+ KQ+ +I+E++ELP++HP+LF ++G+ PK
Sbjct: 199 ERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPK 242
Score = 47.2 bits (107), Expect = 8e-06
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Frame = +3
Query: 339 VVDL-DKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGL 515
V+DL D ++D + + +A+ NE + H L N +P V +VP+ ++ +GGL
Sbjct: 432 VIDLEDDSIDAEILNS---MAVTNEHF--HTALGNS-NPSALRETVVEVPNVSWNDIGGL 485
Query: 516 DKQIKEIKEVIELPVKHPELFDALGIAQPK 605
+ +E++E ++ PV+HPE F+ G++ K
Sbjct: 486 ENVKRELQETVQYPVEHPEKFEKFGMSPSK 515
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 52.4 bits (120), Expect = 2e-07
Identities = 19/44 (43%), Positives = 35/44 (79%)
Frame = +3
Query: 474 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
E++ + Y+ VGG+ KQ+ +I+E++ELP++HP+LF ++G+ PK
Sbjct: 199 ERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPK 242
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = +3
Query: 339 VVDL-DKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGL 515
V+DL D ++D + + +A+ NE + H L N +P V +VP+ ++E +GGL
Sbjct: 432 VIDLEDDSIDAEILNS---MAVSNEHF--HTALGNS-NPSALRETVVEVPNVSWEDIGGL 485
Query: 516 DKQIKEIKEVIELPVKHPELFDALGIAQPK 605
+ +E++E ++ PV+HPE F+ G++ K
Sbjct: 486 ENVKRELQETVQYPVEHPEKFEKFGMSPSK 515
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 52.4 bits (120), Expect = 2e-07
Identities = 19/44 (43%), Positives = 35/44 (79%)
Frame = +3
Query: 474 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
E++ + Y+ VGG+ KQ+ +I+E++ELP++HP+LF ++G+ PK
Sbjct: 200 ERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPK 243
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/89 (31%), Positives = 51/89 (57%)
Frame = +3
Query: 339 VVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLD 518
V+DLD +I+ N +A+ N+ + L N +P V +VP+ ++E +GGL+
Sbjct: 433 VIDLDDE-EIDAEILNS-MAVSNDHF--QTALGNS-NPSALRETVVEVPNVSWEDIGGLE 487
Query: 519 KQIKEIKEVIELPVKHPELFDALGIAQPK 605
+E++E ++ PV+HPE F+ G++ K
Sbjct: 488 NVKRELQETVQYPVEHPEKFEKFGMSPSK 516
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 40.7 bits (91), Expect = 7e-04
Identities = 18/57 (31%), Positives = 34/57 (59%)
Frame = +3
Query: 426 KILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIA 596
KI + V P ++ + ++P T++ VGGL K++++ +E P+KH F +GI+
Sbjct: 262 KIAKSVVGPSINRGITVEIPKVTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGIS 318
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 36.3 bits (80), Expect = 0.016
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 486 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
D ++ +GGL + I ++KE++ P+ +PE F + I P+
Sbjct: 377 DINFDDIGGLSEYINDLKEMVFFPLLYPEFFASYSITPPR 416
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 35.9 bits (79), Expect = 0.021
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 441 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP 602
K+ P ++ +VP +E VGG ++ ++ E +E P KH + F +G P
Sbjct: 705 KIRPSAMREVILEVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPP 758
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 35.5 bits (78), Expect = 0.028
Identities = 20/74 (27%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Frame = +3
Query: 399 LRNESYTLHKILPNKV--DPLVSLMMVEKVPDS----TYEMVGGLDKQIKEIKEVIELPV 560
++NE+ +L K L + V + ++ + +P S +++ +G L+ + +KE++ LP+
Sbjct: 924 IQNENKSLKKSLKDVVTENEFEKKLLSDVIPPSDIGVSFDDIGALENVKETLKELVMLPL 983
Query: 561 KHPELFDALGIAQP 602
+ PELFD + +P
Sbjct: 984 QRPELFDKGQLTKP 997
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 35.5 bits (78), Expect = 0.028
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +3
Query: 495 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
++ V GL+ + +KEV+ +P+ +PE FD LG+ P+
Sbjct: 718 WDSVAGLEGVTQCMKEVVLIPLLYPEFFDNLGLTPPR 754
>At1g08270.2 68414.m00912 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 132
Score = 34.3 bits (75), Expect = 0.064
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 468 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
++ + P+ + +V GL+ + +KE + LPV P+ F A I P+
Sbjct: 83 IIREKPNVKWTVVAGLESAKQALKEAVILPVNFPQFFTARAIYDPR 128
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 33.9 bits (74), Expect = 0.084
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 492 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
T+E V G+D+ ++ +E++E +K PE F ALG PK
Sbjct: 221 TFEDVAGVDEAKQDFEEIVEF-LKTPEKFSALGAKIPK 257
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 33.9 bits (74), Expect = 0.084
Identities = 13/33 (39%), Positives = 25/33 (75%)
Frame = +3
Query: 504 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQP 602
V G+D+ + E++E+++ +K+P+LFD +GI P
Sbjct: 432 VAGIDEAVDELQELVKY-LKNPDLFDKMGIKPP 463
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 33.9 bits (74), Expect = 0.084
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 480 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGI 593
VPD ++ VGGLD + I P+K P+++ A G+
Sbjct: 522 VPDVKWDDVGGLDHLRLQFNRYIVRPIKKPDIYKAFGV 559
Score = 30.7 bits (66), Expect = 0.78
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 471 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP 602
VE T++ GG+ K + E++ + P+ +PE F +G+ P
Sbjct: 224 VEGTKGPTFKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPP 267
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 33.1 bits (72), Expect = 0.15
Identities = 15/42 (35%), Positives = 28/42 (66%)
Frame = +3
Query: 453 LVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF 578
L+S +++ D T++ +G L+K +KE++ LP++ PELF
Sbjct: 805 LLSDVILPSDIDVTFDDIGALEKVKDILKELVMLPLQRPELF 846
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 32.3 bits (70), Expect = 0.26
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 483 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDAL 587
P+ +E + GL+ K +KE + +P+K+P F+ L
Sbjct: 107 PNIKWESIKGLENAKKLLKEAVVMPIKYPTYFNGL 141
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 32.3 bits (70), Expect = 0.26
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 483 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDAL 587
P+ +E + GL+ K +KE + +P+K+P F+ L
Sbjct: 98 PNIKWESIKGLENAKKLLKEAVVMPIKYPTYFNGL 132
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 32.3 bits (70), Expect = 0.26
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 459 SLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDA 584
S + KVP+ ++ VGGL+ I + ++LP+ H +LF +
Sbjct: 645 SALGAPKVPNVKWDDVGGLEDVKTSILDTVQLPLLHKDLFSS 686
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 31.1 bits (67), Expect = 0.59
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = +3
Query: 492 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP 602
T+ +G LD+ + ++E++ LP++ P+LF G+ +P
Sbjct: 412 TFADIGSLDETKESLQELVMLPLRRPDLFKG-GLLKP 447
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 31.1 bits (67), Expect = 0.59
Identities = 12/37 (32%), Positives = 26/37 (70%)
Frame = +3
Query: 492 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP 602
T++ +G LD+ + ++E++ LP++ P+LF G+ +P
Sbjct: 519 TFKDIGALDEIKESLQELVMLPLRRPDLFTG-GLLKP 554
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 31.1 bits (67), Expect = 0.59
Identities = 12/37 (32%), Positives = 26/37 (70%)
Frame = +3
Query: 492 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP 602
T++ +G LD+ + ++E++ LP++ P+LF G+ +P
Sbjct: 514 TFKDIGALDEIKESLQELVMLPLRRPDLFTG-GLLKP 549
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 495 YEMVGGLDKQIKEIKEVIELPVKHPELF 578
+E VGG+ IKE+IELP K P++F
Sbjct: 843 WEDVGGVTDIKNAIKEMIELPSKFPKIF 870
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/53 (24%), Positives = 30/53 (56%)
Frame = +3
Query: 429 ILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDAL 587
+ +K+ +++ +V++ P ++ V GL+ + + E++ LP K +LF L
Sbjct: 193 VYDDKLVEMINTTIVDRSPSVKWDDVAGLNGAKQALLEMVILPAKRRDLFTGL 245
>At1g60700.1 68414.m06833 forkhead-associated domain-containing
protein / FHA domain-containing protein contains
similarity to nucleolar protein GI:2384719 from [Mus
musculus]
Length = 525
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 345 DLDKNVDINDVTANCRVALRNES-YTLHKILPNKVDPL 455
DLD N DI D + R LR ES + ++ N DPL
Sbjct: 64 DLDNNADIGDGDEDIRNCLRPESDFWFKNLMDNPYDPL 101
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 495 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP 602
+E +G L+ K + E++ LP++ PELF + +P
Sbjct: 350 FEDIGALEDVKKALNELVILPMRRPELFARGNLLRP 385
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 486 DSTYEMVGGLDKQIKEIKEVIELPVKHPELF 578
D + +GGL+ + + E++ LP+K PELF
Sbjct: 83 DVEFGSIGGLESIKQALYELVILPLKRPELF 113
>At1g08270.1 68414.m00913 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 126
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 468 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF 578
++ + P+ + +V GL+ + +KE + LPV P+ F
Sbjct: 83 IIREKPNVKWTVVAGLESAKQALKEAVILPVNFPQFF 119
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 486 DSTYEMVGGLDKQIKEIKEVIELPVKHPELF 578
D + +GGL+ + + E++ LP+K PELF
Sbjct: 80 DVEFGSIGGLETIKQALYELVILPLKRPELF 110
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 495 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP 602
++ +G L+ K + E++ LP++ PELF + +P
Sbjct: 149 FDDIGALEHVKKTLNELVILPMRRPELFTRGNLLRP 184
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 468 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF 578
+V + P+ + V GL+ + ++E + LPVK P+ F
Sbjct: 122 IVREKPNIKWSDVAGLESAKQALQEAVILPVKFPQFF 158
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Frame = +3
Query: 399 LRNESYTLHKILPNKV--DPLVSLMMVEKVPDS----TYEMVGGLDKQIKEIKEVIELPV 560
++NE+ + K L + V + ++ + +P S ++ +G L+ +KE++ LP+
Sbjct: 911 IQNENKSTKKSLKDVVTENEFEKKLLSDVIPPSDIGVSFSDIGALENVKDTLKELVMLPL 970
Query: 561 KHPELFDALGIAQP 602
+ PELF + +P
Sbjct: 971 QRPELFGKGQLTKP 984
>At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1195
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +3
Query: 483 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGI 593
P++ E+VG L +++KE+KE ++L K + LG+
Sbjct: 214 PENQIELVG-LSQRLKELKEKLDLSRKETRIVGVLGM 249
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 492 TYEMVGGLDKQIKEIKEVIELPVKHPELF 578
T++ +G L+ +KE++ LP + PELF
Sbjct: 733 TFDDIGALENVKDTLKELVMLPFQWPELF 761
>At4g38870.1 68417.m05504 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 426
Score = 27.9 bits (59), Expect = 5.5
Identities = 24/98 (24%), Positives = 46/98 (46%)
Frame = +1
Query: 148 SSLSPKNLKIFVVFKPSVMNSTLKFVCYARSFSSCKNRDRTSEKWLNQWIKRRSS*KFIL 327
S L P +L I + K + ++F+C ++ ++S + +LN+ +KR S F+
Sbjct: 50 SELLPVDL-IMEILKKLSLKPLIRFLCVSKLWASIIRDPYFMKLFLNESLKRPKSLVFVF 108
Query: 328 KVNSSSI*TRTLILTMSRPIVVSLFATKAIPYTKYYPT 441
+ S ++ L +R I S ++ A T Y+ T
Sbjct: 109 RAQSLGSIFSSVHLKSTREISSSSSSSSASSIT-YHVT 145
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 27.9 bits (59), Expect = 5.5
Identities = 9/36 (25%), Positives = 24/36 (66%)
Frame = +3
Query: 474 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFD 581
+ + + +++ + G D+Q +EI++ I + + PE++D
Sbjct: 311 DSMDEISWDNIAGYDQQKREIEDTILMALHSPEVYD 346
>At3g29185.2 68416.m03659 expressed protein
Length = 411
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 261 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDL 350
G V ++ D+KKV VH EGK DL
Sbjct: 333 GQVVQDISSTSDEKKVTTNVHWEGKMSKDL 362
>At3g29185.1 68416.m03658 expressed protein
Length = 433
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 261 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDL 350
G V ++ D+KKV VH EGK DL
Sbjct: 333 GQVVQDISSTSDEKKVTTNVHWEGKMSKDL 362
>At3g24880.1 68416.m03120 expressed protein
Length = 1957
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 202 MNSTLKFVCYARSFSSCKNRDR 267
MNSTLK C R+ + CK+R +
Sbjct: 1079 MNSTLKIKCIYRNPTECKDRHK 1100
>At3g07740.2 68416.m00935 transcriptional adaptor (ADA2a) identical
to transcriptional adaptor ADA2a [Arabidopsis thaliana]
gi|13591698|gb|AAK31319
Length = 477
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/35 (25%), Positives = 24/35 (68%)
Frame = +3
Query: 390 RVALRNESYTLHKILPNKVDPLVSLMMVEKVPDST 494
++ ++++Y+ K+ P+KVD + +++ + + DST
Sbjct: 443 QIKKKSDAYSFFKVEPSKVDRVYDMLVHKGIGDST 477
>At3g07740.1 68416.m00936 transcriptional adaptor (ADA2a) identical
to transcriptional adaptor ADA2a [Arabidopsis thaliana]
gi|13591698|gb|AAK31319
Length = 548
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/35 (25%), Positives = 24/35 (68%)
Frame = +3
Query: 390 RVALRNESYTLHKILPNKVDPLVSLMMVEKVPDST 494
++ ++++Y+ K+ P+KVD + +++ + + DST
Sbjct: 514 QIKKKSDAYSFFKVEPSKVDRVYDMLVHKGIGDST 548
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,021,404
Number of Sequences: 28952
Number of extensions: 229672
Number of successful extensions: 724
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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