Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0099
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    29   0.43 
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    28   1.3  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    28   1.3  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   1.7  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   3.0  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    27   3.0  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    26   5.3  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   7.0  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    25   9.2  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    25   9.2  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   9.2  

>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 18/58 (31%), Positives = 33/58 (56%)
 Frame = +1

Query: 460 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 633
           EEKR+++EE++K  + +LQA  +  K   N  + KKS    +   + E+ K+ +  +E
Sbjct: 138 EEKRRKIEESDKWHRVLLQA--EGKKLKDNEQLLKKS----IRRKEKEKKKSSDAWKE 189


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 454 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 630
           + EEK +R  E + KR+A  +A ++A +       ++K++     NA+ E   K K + E
Sbjct: 636 EAEEKAKREAEEKAKREAEEKAKREAEENAKR-EAEEKAKREAEENAKREAEEKVKRETE 694

Query: 631 E 633
           E
Sbjct: 695 E 695



 Score = 27.5 bits (58), Expect = 1.7
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 454 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 630
           + EEK +R  E + KR+A  +A ++A +       ++K++     NA+ E   K K + E
Sbjct: 620 EAEEKAKREAEEKAKREAEEKAKREAEEKAKR-EAEEKAKREAEENAKREAEEKAKREAE 678

Query: 631 E 633
           E
Sbjct: 679 E 679



 Score = 25.8 bits (54), Expect = 5.3
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 454 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 630
           + EEK +R  E + KR+A  +A ++A +       ++K++      A+ E   K K + E
Sbjct: 572 EAEEKAKREAEEKAKREAEEKAKREAEENAKR-EAEEKAKREAEEKAKREAEEKAKREAE 630

Query: 631 EE 636
           E+
Sbjct: 631 EK 632



 Score = 25.0 bits (52), Expect = 9.2
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 454 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 630
           + EEK +R  E + KR+A   A ++A +       ++K++      A+ E   K K + E
Sbjct: 580 EAEEKAKREAEEKAKREAEENAKREAEEKAKR-EAEEKAKREAEEKAKREAEEKAKREAE 638

Query: 631 EE 636
           E+
Sbjct: 639 EK 640



 Score = 25.0 bits (52), Expect = 9.2
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 454 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 630
           + EEK +R  E   KR+A  +A ++A +       ++K++      A+ E   K K + E
Sbjct: 588 EAEEKAKREAEENAKREAEEKAKREAEEKAKR-EAEEKAKREAEEKAKREAEEKAKREAE 646

Query: 631 EE 636
           E+
Sbjct: 647 EK 648



 Score = 25.0 bits (52), Expect = 9.2
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 454 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 630
           + EEK +R  E + KR+A  +A ++A +       ++K++      A+ E   K K + E
Sbjct: 604 EAEEKAKREAEEKAKREAEEKAKREAEEKAKR-EAEEKAKREAEEKAKREAEEKAKREAE 662

Query: 631 E 633
           E
Sbjct: 663 E 663



 Score = 25.0 bits (52), Expect = 9.2
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 454 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQK-KSENFGLSNAQLERNKTKEQLE 630
           + EEK +R  E + KR+A  +A ++A +       +K K E    +  + E N  +E  E
Sbjct: 612 EAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEE 671

Query: 631 E 633
           +
Sbjct: 672 K 672


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/53 (32%), Positives = 30/53 (56%)
 Frame = +1

Query: 478 LEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 636
           +EE E+ R+  + A  D +  G    +  +S+  G  +  +++ KTK+QLEEE
Sbjct: 197 VEEQERLRKETIAAFHDVN--GNKDAVSNESDEDG--DFLVKKEKTKKQLEEE 245


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +1

Query: 466 KRQRLEEAEKKRQAMLQAMKDAS---KTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 636
           K   +   +++R A +QA+ D S   +T  +   + +SEN GL N  ++     +QLE+E
Sbjct: 232 KDHEILRLKEERTAAMQAIDDISGTIETIKSDCYKVESENKGLINEVMDMRNFVQQLEQE 291


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 306 PLFAPFVDVFLQLFIQVRPLLVLTLDEFWISLTLLFRSG 190
           P+FA  +   L LF+Q+ P + +    FW S+ L+  +G
Sbjct: 796 PIFAYVISKCLNLFMQIDPSIGVA---FWSSMVLVVAAG 831


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 544 PNFTIQKKSENFGLSNAQLERNKTKEQL 627
           P FTI++K +NF ++N   ERN   ++L
Sbjct: 490 PGFTIEQKDKNFSINN---ERNNFLQKL 514


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 17  PRTPHSNVAVLPVQEPV 67
           PR PHS + +LP + PV
Sbjct: 357 PRYPHSQMVMLPARSPV 373


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 572 SLFFWMVKLGPVLLASFMAWSIAW 501
           SL+FW   L P    +F++W + +
Sbjct: 111 SLYFWTAYLSPPKYRAFLSWFLGY 134


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 223 EFIKRQDQKRSDLDEQLKEY 282
           E +KR+DQK+ D+ E L+EY
Sbjct: 272 ELLKRRDQKQQDV-EALQEY 290


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 530 PARPDPTSPSKRRAK--TSV*AMPSWSATRPRSS 625
           P+RPD TS +K +    +S  A P  +++RP +S
Sbjct: 213 PSRPDSTSTTKSKTSSISSARARPIRASSRPTAS 246


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +1

Query: 454 DIEEKRQRLEEAEKKRQAMLQAMKD----ASKTGPNFTIQKKSENFGLSNAQLERNKTKE 621
           ++EEK   LE A+   Q ++ ++KD     +K       +  ++  G+S+A  ++ K + 
Sbjct: 162 ELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTIGVSSALSKKKKKRN 221

Query: 622 QLEEE 636
           +  ++
Sbjct: 222 RKNQK 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.129    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,723,190
Number of Sequences: 5004
Number of extensions: 23844
Number of successful extensions: 129
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)