Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0099
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0847 + 23630937-23631099,23631200-23631396,23631604-236317...    31   0.58 
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432...    31   0.77 
03_06_0155 - 32031370-32031707,32033066-32033279                       30   1.8  
05_04_0158 + 18613265-18615304                                         28   7.2  

>12_02_0847 +
           23630937-23631099,23631200-23631396,23631604-23631738,
           23631904-23632077,23632195-23632407,23632507-23632751,
           23632890-23632930,23633200-23633238,23633552-23633565
          Length = 406

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = +1

Query: 454 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 633
           +I E+R+R +  ++   A+L+AMK+      N  ++   E     N +LE    K+QL+E
Sbjct: 41  EIAEERERFQLEQRGNDALLEAMKE-ELVAANNELEAAKEEISRKNNELE--SVKKQLQE 97


>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
            27043601-27043705,27043828-27044257,27044356-27044517,
            27044565-27045260,27045349-27046128,27046441-27046654,
            27047621-27047981,27047993-27048140,27048276-27048419,
            27048784-27048888,27049749-27049794,27050089-27050255,
            27050338-27050490,27050654-27050950,27051053-27051220,
            27051298-27051363,27051451-27051927,27052031-27052768,
            27052935-27053120
          Length = 1993

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +1

Query: 463  EKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 633
            E+ ++ ++ +    AMLQ +KD      N  +Q+K     ++  ++E  +TK Q +E
Sbjct: 1431 EEAKKFQKIKMDLLAMLQRVKDVENLNRNEKMQRKDMEEKIARQRMEIEETKRQRDE 1487


>03_06_0155 - 32031370-32031707,32033066-32033279
          Length = 183

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +1

Query: 457 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 636
           IEE +QR EEA + +Q     + +A K    +  +    + G+   +  R K+ E L E+
Sbjct: 98  IEELKQREEEATQAQQQADVKLLEAKKLASQYQKEADKCSSGMDTCEEAREKSSEALVEQ 157


>05_04_0158 + 18613265-18615304
          Length = 679

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = +1

Query: 460 EEKRQRLEEAEKKRQAML-----QAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQ 624
           +EK ++ +E E K Q  L     +AMK   KTG N  I+KK ++      + +    +++
Sbjct: 608 QEKVEKNQEKEMKIQEKLGEIFDKAMKSEEKTGQNPGIEKKIQDTAEKKQEHDARVVQDK 667

Query: 625 LEE 633
           +E+
Sbjct: 668 VEK 670


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.129    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,563,571
Number of Sequences: 37544
Number of extensions: 195543
Number of successful extensions: 787
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)