Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0099
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039039-6|AAO25996.1|  308|Caenorhabditis elegans Troponin t pr...    40   0.002
AF039039-5|AAB94176.2|  347|Caenorhabditis elegans Troponin t pr...    40   0.002
Z75531-10|CAJ85759.1|  500|Caenorhabditis elegans Hypothetical p...    29   2.1  
U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    29   3.7  
AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical...    29   3.7  
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U70851-7|AAB09130.3|  640|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z81115-5|CAB03295.1|  482|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z78418-4|CAB01698.1|  710|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr...    27   8.6  
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.    27   8.6  
AF025458-4|AAB70975.4|  374|Caenorhabditis elegans Hypothetical ...    27   8.6  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    27   8.6  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    27   8.6  

>AF039039-6|AAO25996.1|  308|Caenorhabditis elegans Troponin t
           protein 4, isoform b protein.
          Length = 308

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 7/148 (4%)
 Frame = +1

Query: 211 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXXXXX 390
           EG+   +  + +  +D   +L++Y    R +R             QA+RK++        
Sbjct: 46  EGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEELEKLKEKQAQRKLAREQEEREA 105

Query: 391 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS 570
                                  EEK+++ EE  KK Q M+       + G NF IQKK 
Sbjct: 106 AERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKKAQ-MMGGGFPGQQGGRNFVIQKKE 164

Query: 571 ENFGLSN-------AQLERNKTKEQLEE 633
           E+ G+ +       A+ E   TKEQ EE
Sbjct: 165 ESAGVGDRFGNIVQAKQEMGMTKEQQEE 192


>AF039039-5|AAB94176.2|  347|Caenorhabditis elegans Troponin t
           protein 4, isoform a protein.
          Length = 347

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 7/148 (4%)
 Frame = +1

Query: 211 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXXXXX 390
           EG+   +  + +  +D   +L++Y    R +R             QA+RK++        
Sbjct: 46  EGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEELEKLKEKQAQRKLAREQEEREA 105

Query: 391 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS 570
                                  EEK+++ EE  KK Q M+       + G NF IQKK 
Sbjct: 106 AERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKKAQ-MMGGGFPGQQGGRNFVIQKKE 164

Query: 571 ENFGLSN-------AQLERNKTKEQLEE 633
           E+ G+ +       A+ E   TKEQ EE
Sbjct: 165 ESAGVGDRFGNIVQAKQEMGMTKEQQEE 192


>Z75531-10|CAJ85759.1|  500|Caenorhabditis elegans Hypothetical
           protein C54D10.12 protein.
          Length = 500

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
 Frame = +1

Query: 460 EEKRQRLEEAEKKRQAMLQAMKDAS------KTGPNFTIQKKSENFGLSNAQLERNKTKE 621
           EEK Q++ E E+K Q +L   K+ +      +   +  I++K E     N Q  R K  E
Sbjct: 208 EEKLQQIREKERKLQELLLRQKEEAEEEALRRLANDSEIEQKLEKIRYENEQQARQKDNE 267

Query: 622 Q 624
           Q
Sbjct: 268 Q 268


>U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical
           protein F27C1.6 protein.
          Length = 647

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 454 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLER 606
           D E+ ++ ++E EK +   L      S  GP  T +K+ +NF +   +  R
Sbjct: 514 DFEDMKEGVKEKEKVKDVDLNLAGWGSWVGPGMTEKKRRQNFVIKAKEKRR 564


>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
            protein 1 protein.
          Length = 1963

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/61 (21%), Positives = 35/61 (57%)
 Frame = +1

Query: 454  DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 633
            D+E  +++LEE+E  ++ +LQ+ K   +   + +++ ++      +++  + K + Q+ E
Sbjct: 1397 DVEHLQKQLEESEVAKERILQSKKKIQQELEDSSMELENVRASHRDSEKRQKKFESQMAE 1456

Query: 634  E 636
            E
Sbjct: 1457 E 1457


>AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical
           protein Y57A10A.19 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/54 (22%), Positives = 31/54 (57%)
 Frame = +1

Query: 460 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKE 621
           +EK+Q+L+E EK+R+ + Q  ++          ++ +E+    +++ ++ K +E
Sbjct: 216 KEKKQKLKEMEKRREKLRQKERELLAVSDKVKKEEPAESSDEEDSRKDQRKPRE 269


>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
            F58G4.1 protein.
          Length = 1974

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +1

Query: 457  IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 636
            +E+   +L    + +Q     +++  +T    T +++S +  +SN QLE  + +E LEEE
Sbjct: 1301 LEDAEAQLCALNRIKQQQHSQLEELKRTLDQETRERQSLHSQVSNYQLECEQFRESLEEE 1360


>U70851-7|AAB09130.3|  640|Caenorhabditis elegans Hypothetical
           protein M02B7.5 protein.
          Length = 640

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 233 SVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNAL 337
           S+K  +G        N+STNG N+   RR+S N+L
Sbjct: 594 SMKLSNGSNSSAGSSNSSTNGVNNSSFRRLSFNSL 628


>Z81115-5|CAB03295.1|  482|Caenorhabditis elegans Hypothetical
           protein T05D4.5 protein.
          Length = 482

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +1

Query: 454 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 633
           D EEK+++  E +KK+ A  +  KDA          +K ++ G    + +  + K++  E
Sbjct: 411 DAEEKKKKDAEEKKKKDAEDEKKKDAGDEKKKDAEDEKKKDAGDEKKKKDAGEKKKKDAE 470

Query: 634 E 636
           E
Sbjct: 471 E 471


>Z78418-4|CAB01698.1|  710|Caenorhabditis elegans Hypothetical
           protein F25D7.5 protein.
          Length = 710

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 111 LLSVARVEVVTQSLG--TGSWTGSTATLECGVRGDLQP 4
           +LS ++  + T S    T S+T S  T+ CG RG++ P
Sbjct: 41  ILSSSKETIDTTSTASLTCSYTKSITTVSCGTRGNIMP 78


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 23   TPHSNVAVLPVQEPVPSD*VTTSTRATLNKQPT 121
            T  S+VAVLP+ E   S   TT+T  T  ++PT
Sbjct: 3254 TDDSDVAVLPIDEEEES---TTTTTTTTTEEPT 3283


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 23   TPHSNVAVLPVQEPVPSD*VTTSTRATLNKQPT 121
            T  S+VAVLP+ E   S   TT+T  T  ++PT
Sbjct: 3254 TDDSDVAVLPIDEEEES---TTTTTTTTTEEPT 3283


>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical protein
            F35G12.8 protein.
          Length = 1549

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +1

Query: 457  IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 633
            +E+K++ +EE EKKR  +    + A        IQ K +       Q  R++ KE L++
Sbjct: 869  LEDKQKIVEELEKKRDEL--GEEAAKVKARQAEIQSKLDGIFKELVQCHRDEAKESLQK 925


>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
          Length = 1518

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 23   TPHSNVAVLPVQEPVPSD*VTTSTRATLNKQPT 121
            T  S+VAVLP+ E   S   TT+T  T  ++PT
Sbjct: 1068 TDDSDVAVLPIDEEEES---TTTTTTTTTEEPT 1097


>AF025458-4|AAB70975.4|  374|Caenorhabditis elegans Hypothetical
           protein C01B12.2 protein.
          Length = 374

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +1

Query: 463 EKRQRLEEAEKKRQAMLQAMKDASKTGP----NFTIQKKSENFGLSNAQLERNKTKEQL 627
           E ++R EEAE+K Q    A+K   +T      N TIQ K+    L    +E     + L
Sbjct: 220 ENQKRQEEAERKLQEKQNAIKCLMETDSVTFWNQTIQSKTSTVVLDRISMELGSLAQNL 278


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 23   TPHSNVAVLPVQEPVPSD*VTTSTRATLNKQPT 121
            T  S+VAVLP+ E   S   TT+T  T  ++PT
Sbjct: 3254 TDDSDVAVLPIDEEEES---TTTTTTTTTEEPT 3283


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 23   TPHSNVAVLPVQEPVPSD*VTTSTRATLNKQPT 121
            T  S+VAVLP+ E   S   TT+T  T  ++PT
Sbjct: 3254 TDDSDVAVLPIDEEEES---TTTTTTTTTEEPT 3283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.129    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,849,200
Number of Sequences: 27780
Number of extensions: 143034
Number of successful extensions: 741
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)