Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0095
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    29   0.36 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    29   0.63 

>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 143 NSY-HKYLAFQRQ-VCSYFNFVTFSFFSKNNIVNIYIKLSIL 262
           N+Y   YLA Q   V S+F+F  +S F  NN+  I+I  +IL
Sbjct: 275 NAYVSMYLAKQTDFVRSFFHFDPYSLFISNNLEEIHINWNIL 316


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
 Frame = +2

Query: 173 RQVCSY-FNFVTFSFFSKNNIVNIYIKLSILYIGNFTDLKCH-INSVKT*KKNRLNFIF- 343
           R + S+  + +  SFFS  N +N + K S L + NF        N++      RL+  F 
Sbjct: 315 RSIRSFNLDLLNSSFFSLKNFLNFFGKRSSLSLANFRFHTVEPKNNIAKLYDPRLHLFFS 374

Query: 344 -KNISFIRL*KFYMYLIKSKFVQKTANQSLGSLKTTN 451
            ++ SF      Y +L K   ++KT   SL S +  N
Sbjct: 375 LRHNSFFESYFIYFFLAKLILLKKTV-LSLASTEQAN 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,885,357
Number of Sequences: 5004
Number of extensions: 33639
Number of successful extensions: 64
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)