Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0094
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888...    27   9.5  
04_01_0070 - 706640-706747,707221-707307,707397-707502,707585-70...    27   9.5  

>11_06_0621 +
           25587476-25587604,25588230-25588423,25588800-25588874,
           25589434-25591852
          Length = 938

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 490 CKLILYMF*PCAVNSCEFSVLSANVLVKFNC 582
           C +I     P  ++SC FSVL+A+  V+ +C
Sbjct: 130 CFIIHLRIPPLGLSSCPFSVLTASASVQSDC 160


>04_01_0070 -
           706640-706747,707221-707307,707397-707502,707585-707693,
           707766-708145,708508-708601,709351-709475,709633-709674,
           710822-710892,710979-711060,711157-711277,712404-712713
          Length = 544

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 503 YICFNLVPLTHASSVCLVRMYLLNSTVTTR 592
           Y+C   +  + ASS+ ++RMY L+S +TTR
Sbjct: 254 YVCSTYLG-SAASSIDIIRMYNLSSDMTTR 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,404,321
Number of Sequences: 37544
Number of extensions: 248090
Number of successful extensions: 361
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)