Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0094
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132862-22|CAB70233.1|  169|Caenorhabditis elegans Hypothetical...    29   2.1  
AF016657-13|AAB93657.1|  274|Caenorhabditis elegans Hypothetical...    29   3.7  
Z82276-4|CAB05241.3|  327|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AC006675-2|AAK84549.1|  333|Caenorhabditis elegans Serpentine re...    27   8.6  

>AL132862-22|CAB70233.1|  169|Caenorhabditis elegans Hypothetical
           protein Y73F8A.27 protein.
          Length = 169

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = +3

Query: 213 SGVRLILLSKGYVRMV--TVAFPTSNIHFLSSALH*T 317
           S +RL + +KG+ R +  T AFP  N HF++S++  T
Sbjct: 3   SVLRLAMRAKGFSRFLAETQAFPVKNRHFMTSSVRKT 39


>AF016657-13|AAB93657.1|  274|Caenorhabditis elegans Hypothetical
           protein C16C4.12 protein.
          Length = 274

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 182 YLNMYLFNFSQWR-AIDFIVQRLRANGYCCLSNIKYTFS 295
           + N  + N S W  A+DF ++ +  NG C  SN+   F+
Sbjct: 180 HCNKEMSNRSNWTIAVDFTLKLVSTNGQCLTSNMTSVFN 218


>Z82276-4|CAB05241.3|  327|Caenorhabditis elegans Hypothetical
           protein K03D3.4 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 210 LKLNKYIFKYVVFQDTLCKSLYIVS 136
           + + KYI KY+VF    C S Y++S
Sbjct: 143 ISIQKYIHKYIVFVYLACCSRYMLS 167


>AC006675-2|AAK84549.1|  333|Caenorhabditis elegans Serpentine
           receptor, class h protein34 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 229 FYCPKVTCEWLLLPFQHQIYIFYPA 303
           F+C  VTCEWL   F   I  F P+
Sbjct: 54  FHCCCVTCEWLNNAFLIDIMTFQPS 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,313,589
Number of Sequences: 27780
Number of extensions: 257773
Number of successful extensions: 433
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)