Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0092
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   3.8  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    24   8.8  
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...    24   8.8  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    24   8.8  
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...    24   8.8  

>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -2

Query: 225 EEPARNSVDICRMTLILHLSELNYNISFEV*SRLLKIKFYLLS 97
           EE  +NS  +C+  L   L EL     FEV S  +++ F  LS
Sbjct: 436 EELTQNSETLCKEKLKEKLEELFTGFEFEV-SEAVEVAFQKLS 477


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 185  VMRQISTEFLAGSSQWMLGSEPAVVFKKWCASVRVKSD 298
            +M Q  +E L GSS +M  S+    +K+W   V + SD
Sbjct: 921  IMVQYWSE-LTGSSNYMQESDLEYPYKRWFPHVFMDSD 957


>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 229 LRRTGKKLSRYLPHDTYITF 170
           L + GKK++ ++PHD  + F
Sbjct: 74  LIKNGKKVTAFVPHDGCLNF 93


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 212 LAGSSQWMLGSEPAV 256
           L G+S W +GS+PAV
Sbjct: 477 LNGNSWWTVGSQPAV 491


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 229 LRRTGKKLSRYLPHDTYITF 170
           L + GKK++ ++PHD  + F
Sbjct: 74  LIKNGKKVTAFVPHDGCLNF 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,190,438
Number of Sequences: 5004
Number of extensions: 18536
Number of successful extensions: 34
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)