Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0088
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.0  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   6.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 417  ATFAQFFGSASPFQEFFDLNGGG 485
            AT     G+ +P +E  D+NGGG
Sbjct: 1550 ATLTVTGGTIAPARELPDVNGGG 1572


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 362 EWSWWRSIIFLHVPRRPESNVRAVLWFGQPVPGILRSEWRWN 487
           E+  WR    ++  R+P +N  +V W          S W+WN
Sbjct: 144 EYYVWRDARIVNGTRQPPNNWLSVFW---------GSAWQWN 176


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 703 FLTQPRAISSNDTYKSCSMGGSCVFSFL 620
           F T    I S    + C+    C+FSFL
Sbjct: 127 FATTSTTIVSGAMAERCNFKAYCLFSFL 154


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 625 RRRRRTPPSNTI 660
           RRRRRTP  N++
Sbjct: 409 RRRRRTPRYNSV 420


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 354 PYHPLGLLRRAHHK 313
           P HPL LLR A  K
Sbjct: 357 PKHPLDLLREADFK 370


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 354 PYHPLGLLRRAHHK 313
           P HPL LLR A  K
Sbjct: 357 PKHPLDLLREADFK 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,245
Number of Sequences: 438
Number of extensions: 5114
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)