Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0084
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    30   0.40 
SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   1.2  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    27   2.8  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   6.6  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    26   6.6  
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce...    25   8.7  

>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 268 RLCKFNSNIFELEQFIIDLNKNKPDSNLAKTK 363
           +L K N  + ELEQ   D+NK+  D +L K K
Sbjct: 864 KLTKLNFQVNELEQLEKDINKSSEDCDLQKKK 895


>SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 100

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 100 TPYCY*KSFNQQINLSILCKNSNIANAPRARHR 2
           TPY Y  SF+  +   I  +N++I +AP  R R
Sbjct: 27  TPYTYIVSFHNFVRFPIKQRNTSIHHAPNKRKR 59


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 109 SGAFLYPRPRTSLALHQTLSEYCSIK 186
           S A L+P   TSL+L+ + SEY S++
Sbjct: 440 SPANLFPNKETSLSLYSSFSEYNSLE 465


>SPAC6C3.06c |||P-type ATPase, calcium
            transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 420  CFKSI*IIYAVLVNIFDRFLVKLIDFYFISVHSE 521
            CF     I  VL++++   +++L  FY I    E
Sbjct: 903  CFSYKNFISCVLISVYQGLIIQLFTFYLIGFEEE 936


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 495 FYFISVHSEIEPYFSNCTV 551
           F + SVH+++ PY S+C V
Sbjct: 23  FPYCSVHAQLYPYVSDCMV 41


>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 170

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 208 LD*IVFRF*LSSIRITFDAMQVKFAG 131
           LD  +FRF LSS+ ++  ++ V FAG
Sbjct: 4   LDSSIFRFRLSSLHVSSRSLGVYFAG 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,954
Number of Sequences: 5004
Number of extensions: 53841
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)