Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0082
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    28   0.85 
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    27   2.6  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    27   2.6  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   7.9  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    25   7.9  

>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 28.3 bits (60), Expect = 0.85
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 103 FQIISPSHPCKEIYEPCCQIYVPVPQFVCPIILQ 2
           ++ ++   PCK +  P C I      ++CP  LQ
Sbjct: 51  YEPVTCKAPCKAVLNPYCHIDTRAKFWICPFCLQ 84


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -2

Query: 124 NNIGGSS-FQIISPSHPCKE 68
           NNI     F +I P HPCKE
Sbjct: 414 NNIADDDLFDVILPKHPCKE 433


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = +1

Query: 136 TKNRGWDLQTTKWNELKQSSKSFFA*YHFFDDFCKVIQKQASGISY 273
           TK++ W     +W+++ +  +   A   F D +C++  +   G+SY
Sbjct: 638 TKDQEWRRSKREWSKIWRQIEKKNAQAAFDDRYCRIEGRDRRGLSY 683


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 214 ITQRSFLKTVSIHSIWSFVSPIPCS*CPLLNNIGGSSFQII 92
           +   S ++   I+S+ +F S + CS C  L  +GG S  ++
Sbjct: 313 VMHMSIVQVGFINSVKTFGSLLTCSVCLFLTYVGGFSVHMM 353


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 391 EFDLKLIKKCISLN*YNKTQYKNYQQKLRK 302
           ++D+K I+K  SL+ Y   +  NY +K +K
Sbjct: 251 DWDIKKIQKDYSLDVYGAIRVINYSRKTKK 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,246,256
Number of Sequences: 5004
Number of extensions: 44108
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)