Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0082
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26650.1 68414.m03245 expressed protein                             29   2.9  
At5g55960.1 68418.m06979 expressed protein                             28   3.9  
At3g11397.1 68416.m01389 prenylated rab acceptor (PRA1) family p...    28   5.1  
At5g03460.1 68418.m00302 expressed protein                             27   9.0  

>At1g26650.1 68414.m03245 expressed protein
          Length = 335

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 449 FPSFVTVILLSK-AFVYFIEYEFLNAI*AFLSYIKIISPYW 568
           FP F+TV LLSK A VY ++  +   +     ++ I+   W
Sbjct: 111 FPVFITVSLLSKAAVVYSVDCSYSREVVDISKFLVILQKIW 151


>At5g55960.1 68418.m06979 expressed protein
          Length = 648

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +2

Query: 404 LVIKGTLLYLHKRVKFPSFVTVILLSKAFVYFIEYEFLNAI*AFLSYIKIISPYW 568
           L I G LL   +   F   +T +L     +Y I + +++ + AF+S +  I PYW
Sbjct: 501 LAISGVLLATAEIAFFQGCLTWLLFR---LYNIHFLYMSTVLAFISALLPIFPYW 552


>At3g11397.1 68416.m01389 prenylated rab acceptor (PRA1) family
           protein contains Pfam profile PF03208: PRA1 family
           protein
          Length = 209

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +1

Query: 157 LQTTKWNELKQSSKSFFA*YHFFDDFCKVIQKQASGISYYNNSYLLK*LFLI 312
           L+  +W+   +S   FF+ + F   F K + +    + YY  +Y +  +F++
Sbjct: 15  LREVEWSASPRSLAEFFSRFAFPRSFSKWMSRLKCNLYYYRTNYFILFVFVL 66


>At5g03460.1 68418.m00302 expressed protein
          Length = 89

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 5/23 (21%)
 Frame = +2

Query: 41 INLTTRFIDFF-----AWMGWAY 94
          INL  R ID+F     AW+GW Y
Sbjct: 16 INLMPRIIDYFMAKLYAWLGWEY 38


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,053,550
Number of Sequences: 28952
Number of extensions: 208002
Number of successful extensions: 424
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)