Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0081
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0223 - 8021040-8021247,8022275-8022367,8022808-8023059,802... 29 2.4
10_01_0313 + 3447065-3448204 29 3.2
04_04_0529 - 25997736-25998055,25998441-25998804,25999563-259996... 29 4.3
03_02_0014 + 4955759-4956106,4956229-4956277,4956372-4956579,495... 29 4.3
03_03_0071 + 14257840-14257953,14259031-14259167,14259196-142592... 28 5.6
12_01_0919 - 9086879-9087064,9087842-9087923,9088357-9089553,908... 28 7.5
09_01_0027 - 469856-470773,470780-471261,471296-471408,471453-47... 27 9.9
04_04_1525 - 34156813-34157058,34157245-34157435,34157885-341579... 27 9.9
03_05_0190 - 21770610-21770641,21770741-21770811,21771058-217711... 27 9.9
01_01_0147 - 1332752-1333447,1333557-1333739 27 9.9
>02_02_0223 -
8021040-8021247,8022275-8022367,8022808-8023059,
8023143-8023597,8023667-8023983,8024019-8024298,
8024423-8024728,8024762-8025130,8025216-8025455
Length = 839
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -1
Query: 309 VKQWEHVSNGTQHGDYADPPKSYVYFIGND-VSFQGW 202
VK W+HVSNG + + + K + + G++ S++GW
Sbjct: 172 VKDWDHVSNGDKEVLWKELKKIFQFPDGSEAASWRGW 208
>10_01_0313 + 3447065-3448204
Length = 379
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 283 IGYVFPLFNNPVSAFYKALLANAATSALRLHQRIPAREISL 405
+G+ FP +PV +F + A L H+ +P REI L
Sbjct: 80 LGFFFPYDFDPVFSFNAGFRSTTAQHHLPAHRFLPEREIGL 120
>04_04_0529 - 25997736-25998055,25998441-25998804,25999563-25999675,
25999880-25999989,26000155-26000311,26000390-26000915,
26001101-26001265,26002470-26002589,26003022-26003093,
26003422-26003499,26003965-26004057,26004491-26004647,
26005351-26005589,26006907-26007050,26007637-26007666,
26010610-26010993,26011486-26011554,26012353-26012418,
26013166-26013255,26013583-26013628,26014318-26014419,
26014552-26014694
Length = 1195
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 359 EVAAFASNAL*NADTGLLNNGNTYPMVHSTVITRTPQRATSILL 228
E A + N + DT +N+GNT P + T+ + TP + T L+
Sbjct: 961 EDIARSVNVVHVVDTTTVNSGNTEPSSYVTLFSNTPGKLTKELV 1004
>03_02_0014 +
4955759-4956106,4956229-4956277,4956372-4956579,
4956700-4956874,4956981-4957046,4957150-4957263,
4957366-4957482,4957589-4957715,4957826-4958112,
4958209-4958399,4958937-4959022,4959117-4959193,
4959330-4959473
Length = 662
Score = 28.7 bits (61), Expect = 4.3
Identities = 27/102 (26%), Positives = 44/102 (43%)
Frame = +1
Query: 256 VRVITVLCTIGYVFPLFNNPVSAFYKALLANAATSALRLHQRIPAREISLSRDFMARFFL 435
V I VL T+ + PLF +A +++ +A + H ++ DF+A
Sbjct: 423 VMSIVVLLTLELITPLFKYTPNAILSSIIISAVLGLVDYHTAYLIWKVD-KLDFLACLGA 481
Query: 436 EDSAHYLFYSLIFMNVVPNLLILVPIFLFALLHAASYSLTIL 561
F+ +IF +V LLI V I L +L + T+L
Sbjct: 482 -------FFGVIFSSVEYGLLIAVAISLAKILLQVTRPRTVL 516
>03_03_0071 +
14257840-14257953,14259031-14259167,14259196-14259246,
14260396-14260499,14260887-14261020
Length = 179
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 436 EDSAHYLFYSLIFMNVVPNLLILVPIFLFALLHA 537
ED +L + LIFM + +LIL +F+ + HA
Sbjct: 71 EDHGQFLSHVLIFMEPMNVILILKTLFVITISHA 104
>12_01_0919 -
9086879-9087064,9087842-9087923,9088357-9089553,
9089598-9089961,9090086-9090188,9090234-9090479
Length = 725
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 309 VKQWEHVSNGTQHGDYADPPKSYVYFIGNDVS 214
VK W+HVSNG + + + K + + G++++
Sbjct: 146 VKDWDHVSNGDKEVLWKELKKIFQFLDGSEIA 177
>09_01_0027 -
469856-470773,470780-471261,471296-471408,471453-472003,
472089-472328
Length = 767
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 309 VKQWEHVSNGTQHGDYADPPKSYVYFIGNDVS 214
VK W+HVSNG + + + K + + G++V+
Sbjct: 172 VKDWDHVSNGDKEVLWKELKKIFQFTDGSEVA 203
>04_04_1525 -
34156813-34157058,34157245-34157435,34157885-34157956,
34158351-34158419,34158531-34158639,34158872-34158987,
34159117-34159210,34159289-34159460,34159545-34159669
Length = 397
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 544 YSLTILDTLGQNSLWVARLLISLVEF 621
+ L I++ LG NSLWV R L F
Sbjct: 163 HHLLIMEELGGNSLWVDRFLARFAAF 188
>03_05_0190 -
21770610-21770641,21770741-21770811,21771058-21771168,
21771249-21771500,21771584-21772086,21772188-21773234,
21773361-21773768,21773814-21773956,21774020-21774053
Length = 866
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 309 VKQWEHVSNGTQHGDYADPPKSYVYFIGNDVSFQGWDAF 193
VK W+HVSNG + + + K + + G++ + WD F
Sbjct: 164 VKDWDHVSNGDKEVLWKELKKIFQFPDGSEAA---WDDF 199
>01_01_0147 - 1332752-1333447,1333557-1333739
Length = 292
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 275 CVPLDTCSHCLTIQCRHSTKRYSRTLRLQRC 367
C PL+ ++ CR ST Y R +R C
Sbjct: 92 CRPLEKVLAAMSAPCRFSTSAYMRLIRASGC 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,561,143
Number of Sequences: 37544
Number of extensions: 409997
Number of successful extensions: 1097
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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