Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0076
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22149| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_50830| Best HMM Match : RVT_1 (HMM E-Value=0.04)                    28   6.8  
SB_4672| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.8  

>SB_22149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 485 SLKYIFTNNWVVVQF 529
           S KYIFT+ W+V+QF
Sbjct: 207 SNKYIFTHRWIVIQF 221


>SB_50830| Best HMM Match : RVT_1 (HMM E-Value=0.04)
          Length = 273

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +2

Query: 245 FLLNESECRAQGFNKQIRKNSYSSLVKYKLVK 340
           FL NE++C+AQ F ++++    +  +K K+V+
Sbjct: 225 FLFNETKCKAQRFTRKMKPFVTNYTIKTKVVE 256


>SB_4672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 392 LKVKDIPK*IFECTKYKHRNYNFAFVHFSFFSLKYIFTNN 511
           L +KD  K IF+ TK+KHR + F       FS + + T++
Sbjct: 239 LLIKDFNKFIFKQTKHKHRKH-FCMSCLQCFSSERVLTSH 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,944,123
Number of Sequences: 59808
Number of extensions: 381363
Number of successful extensions: 705
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)