Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0075
(473 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 33 0.022
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 29 0.48
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce... 28 0.83
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 27 1.1
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 27 1.1
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 1.1
SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces pombe... 27 1.9
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 26 2.5
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 26 2.5
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 25 5.9
SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy... 25 5.9
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 5.9
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 25 7.8
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 25 7.8
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 33.1 bits (72), Expect = 0.022
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = -2
Query: 292 KEAKLREIEAQEKVIRDA---KLKEEKERASALEIKALEEMASGTAKK*KD 149
KE KL++ AQE+ IR +LK EKER + K L E AKK K+
Sbjct: 76 KEKKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKE 126
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 28.7 bits (61), Expect = 0.48
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 310 QNRLSKKEAKL-REIEAQEKVIRDAKLKEEKERASALEIKALEEMASGTAKK*KDK 146
Q + +K K RE A+E K KEE+ER +A E A A+ K +DK
Sbjct: 291 QEKAAKAARKWEREAGAREAAAAAQKKKEEEERRAAEEAAAKASAAAANKKAKEDK 346
>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 292
Score = 27.9 bits (59), Expect = 0.83
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -2
Query: 325 YGAFHQNRLSKKEAKLREIE--AQEKVIRDAKLKEEKERASALEIKALE 185
+G ++NR +K +AK+R+IE A +DAK +E + E +A E
Sbjct: 30 FGLKNKNRSTKVQAKIRQIEQNAAASGSKDAKRQEALRKRREEEKRAAE 78
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 27.5 bits (58), Expect = 1.1
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -2
Query: 316 FHQNRLSKKEAKLREIEAQEKVIRDAKLKEEKERASALEI-KALEE 182
+H R S+K+A L + + + + ++ K+R +LE+ KAL++
Sbjct: 446 YHMKRRSRKDAPLLKSQLLMDSLENLPVRASKDRVRSLEVAKALQD 491
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 27.5 bits (58), Expect = 1.1
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 83 WRF*LKCGKKYRQISLLTYNYFIFSLL 163
W+F L K+ +I+++ +YF+F+LL
Sbjct: 702 WQFFLLSRSKFAKINVIERSYFVFALL 728
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 27.5 bits (58), Expect = 1.1
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = -2
Query: 310 QNRLSKKEAKLREIEAQEKVIRDAKLKEEKERASALEIKALEEMASGTAK 161
Q+ L +++ LRE E+ ++ A+ ++ + ALE++A + A+ A+
Sbjct: 106 QDLLEQRQVALREAREAEEELQRARQYNDRSTSEALELEARAKKAAQDAE 155
>SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -2
Query: 313 HQNRLSKKEAKLREIEAQEKVIRDAKLKEEKERASALEIKALEE 182
H N+ KKEAK + + + L +K++ E+K+L+E
Sbjct: 299 HLNKFEKKEAKKDRKKKSKDGDQTTLLLRKKQKLGNAEVKSLDE 342
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.2 bits (55), Expect = 2.5
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 25 TSLDLFSPIFSLNKLITTELAILIEMWK 108
TSLDL + +FSL+K + T+ AIL K
Sbjct: 228 TSLDLTNSVFSLSK-VNTDCAILTSSGK 254
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 2.5
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -2
Query: 328 LYGAFHQNRLSKKEAKLREIEAQEKVIRDAKLKEEKERASALEIKALEEMASGTAK 161
L A+++ KK+ +E V+ + K+ A LE + E+M S AK
Sbjct: 305 LESAYNEELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAK 360
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/37 (35%), Positives = 28/37 (75%), Gaps = 4/37 (10%)
Frame = -2
Query: 310 QNRLSKK-EAKLREIEAQEKV---IRDAKLKEEKERA 212
+ +L+K+ E +L+E+E QEK+ I +++L+E+++ A
Sbjct: 107 EEKLAKRREQELQELEKQEKIEAEILESRLQEQRKVA 143
>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 166
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 313 HQNRLSKKEAKLREIEAQEKVIRDAKLKEEKERASALE 200
HQ L + + R+IE Q++ R + + +KE A AL+
Sbjct: 84 HQKMLQIQAEEQRKIELQQEQERLEQERRQKEEAIALQ 121
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 229 EEKERASALEIKALEEMASGTAK 161
EEK++AS L + L + SGT K
Sbjct: 191 EEKQQASGLNFRGLAKPISGTLK 213
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 311 PEQAIKERSETTRD*SPREGHPRCQAEGGERKS 213
PE A + S+++ R+G +E GER+S
Sbjct: 127 PESASRSSSQSSHQRHSRDGRGELGSEHGERRS 159
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -2
Query: 310 QNRLSKKEAKLREIEAQEKVIRDAKLKEEKERASALE 200
++ +KKE K R+ EA+++ + KE+KE+ E
Sbjct: 438 EDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKKSE 474
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,843,348
Number of Sequences: 5004
Number of extensions: 33278
Number of successful extensions: 117
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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