Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0073
(346 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 27 0.82
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 26 1.4
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 3.3
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 4.4
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 25 4.4
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2... 25 4.4
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 24 5.8
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 24 5.8
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 24 5.8
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 24 5.8
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 24 5.8
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz... 24 7.6
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 24 7.6
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 24 7.6
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 24 7.6
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 27.1 bits (57), Expect = 0.82
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 200 KHDLGCSEKKPGIEISDLTYEIKGKKFIFDYTGRGD 307
KHDL +K+P + +D T + +I+DY + D
Sbjct: 19 KHDLQKDQKQPHVNNADRTTQSLLNSYIYDYLIKKD 54
>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 1.4
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -1
Query: 337 PVGFYRDSGGVTAPRVIEDKLFPLDFVRKVTYFDTRLFLRASQVVFPLH 191
P+G +R+S + E K DF+ +V+YF + +S V F H
Sbjct: 47 PIGEFRESIRESVKPDTESKQVFQDFIDRVSYFSGQYDQSSSYVEFRKH 95
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 3.3
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 143 RSILVQENVYDHFKRAMKWKHDLGCSEKKPGIEISDLTYE 262
R +L+++ V D + K+DL + KK G+ +++ TY+
Sbjct: 433 RKVLIKDLVLD----IERLKNDLNATRKKNGVYLAESTYK 468
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 24.6 bits (51), Expect = 4.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 30 WSEWFSIGQPLLLSQPGAIWTL 95
W EWF++ P+ L +IW L
Sbjct: 612 WGEWFAVSIPVSLLCIFSIWFL 633
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 24.6 bits (51), Expect = 4.4
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 50 RATTAVVTARCDLDSAVDMFIASS--PNAPWRLRSILVQE 163
R TT TAR L S+ +F +SS PN P RS L+ +
Sbjct: 43 RLTTPRTTARTPLASSPLLFESSSPGPNIPQSSRSHLLSQ 82
>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 4.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 248 HLFRYPAFSPSIPSRVSTSWLF*NGRTRFPALK*IAVSRVHL 123
H YP F P + + + + L+ R+RF L + +S HL
Sbjct: 297 HNLDYPLFYPKLYALLDRNLLYLKTRSRFFRLLDLFLSSTHL 338
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 24.2 bits (50), Expect = 5.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 242 ISDLTYEIKGKKFIFDYTGRGDAAGITIE 328
+S + +++KG F TG GD +TIE
Sbjct: 306 VSAVLHKMKGSFFYLLQTGDGDLLKLTIE 334
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 24.2 bits (50), Expect = 5.8
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = -2
Query: 288 SKINFFPLISYVRSLISIPGFFSEHPKSCFHFMALLKW 175
+ + FF + Y++ +S PK + MA L W
Sbjct: 235 TSLGFFDFVQYLQFAVSTAQVSVMFPKFYINIMAALSW 272
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 24.2 bits (50), Expect = 5.8
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 60 LLLSQPGAIWTLPLTCSSLRHQMHPGDCD 146
L +S+ A W L +TC +MH + +
Sbjct: 417 LFMSEEKAFWMLVITCRKYLPKMHDANLE 445
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 24.2 bits (50), Expect = 5.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 133 LETAIYFSAGKRVRPFQKSHEVETRLGMLGEK 228
L+ + S GK ++ + H+VE +G GE+
Sbjct: 574 LQRYVIGSKGKNLQKLRNEHQVELLVGEYGEE 605
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 24.2 bits (50), Expect = 5.8
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +1
Query: 127 CTLETAIYFSAGKRVRPFQKSHEVETRLGMLGEKAGYR 240
C + + F ++V PF+ +H + +G G + G+R
Sbjct: 2252 CLFDKGLTFEKPEKV-PFRLTHNMVDAMGPTGYEGGFR 2288
>SPCC1259.09c |||pyruvate dehydrogenase protein x
component|Schizosaccharomyces pombe|chr 3|||Manual
Length = 456
Score = 23.8 bits (49), Expect = 7.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 245 LFRYPAFSPSIPSRVSTSWLF*NG 174
+FR PA SP++ T W F G
Sbjct: 37 MFRMPALSPTMEEGNITKWHFKEG 60
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 23.8 bits (49), Expect = 7.6
Identities = 7/16 (43%), Positives = 14/16 (87%)
Frame = +3
Query: 24 LKWSEWFSIGQPLLLS 71
+K+S+W+++ PLL+S
Sbjct: 1 MKFSQWYTLTAPLLIS 16
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 23.8 bits (49), Expect = 7.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 176 HFKRAMKWKHDLGCSEKK 229
HFK+ K KH G S KK
Sbjct: 185 HFKKEKKSKHSSGKSSKK 202
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 23.8 bits (49), Expect = 7.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 170 YDHFKRAMKWKHDLGCSEKKP 232
YDHF ++W HD G E P
Sbjct: 353 YDHFLLLVEWHHD-GIVEHVP 372
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,568,077
Number of Sequences: 5004
Number of extensions: 31685
Number of successful extensions: 90
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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