Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0073
(346 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0227 + 21475954-21476771,21477215-21479144,21479292-214794... 29 0.74
12_02_0267 - 16588799-16588826,16589333-16590144 28 1.7
03_05_1131 - 30606808-30607042,30607141-30607664 27 3.0
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 27 3.9
12_02_0269 - 16617292-16618852,16622763-16623562 27 5.2
10_08_0280 - 16455364-16455412,16455658-16455788,16457026-16457328 27 5.2
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 26 6.9
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 26 6.9
06_01_0172 + 1362101-1363708 26 6.9
01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755 26 6.9
11_06_0204 + 21191611-21192807 26 9.1
06_03_0190 - 17708513-17708548,17708897-17709295 26 9.1
03_05_0793 + 27755704-27756386,27756473-27757274,27757379-277576... 26 9.1
>11_06_0227 + 21475954-21476771,21477215-21479144,21479292-21479426,
21480287-21480392,21480560-21480576
Length = 1001
Score = 29.5 bits (63), Expect = 0.74
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 197 WKHDLGCSEKKPGIEISDLTYEIKGKKFIFDYTGRGD 307
W+H + +P I +S L I F+F Y +GD
Sbjct: 896 WRHMVNSHPNRPAIRVSRLEEFISLSHFVFQYRMKGD 932
>12_02_0267 - 16588799-16588826,16589333-16590144
Length = 279
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -1
Query: 217 ASQVVFPLHGSFEMVVHVFLH*NRSQS 137
A QV +HG FE VV VF NRS S
Sbjct: 211 AIQVYNKIHGRFECVVFVFASRNRSAS 237
>03_05_1131 - 30606808-30607042,30607141-30607664
Length = 252
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 327 SIVIPAASPRPV*SKINFFPLISYVRSL 244
SI PAA+PRPV + F+ + +VR L
Sbjct: 33 SIPAPAAAPRPVRIYVVFYSMYGHVRLL 60
>03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 10 GTRQDLNGVNGFQSGNHCC-CHSPVRSGLCR*HVHRFVTKCTLE 138
GT+++ G + + + CC C P+ LC H F +C LE
Sbjct: 1168 GTQRERLGKDSIKPFDACCLCLKPLIHPLCCPKGHTFCKECILE 1211
>12_02_0269 - 16617292-16618852,16622763-16623562
Length = 786
Score = 26.6 bits (56), Expect = 5.2
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -1
Query: 217 ASQVVFPLHGSFEMVVHVFLH*NRSQS 137
ASQV +H FE V VF NRS S
Sbjct: 207 ASQVYKKIHSRFECAVFVFASRNRSTS 233
>10_08_0280 - 16455364-16455412,16455658-16455788,16457026-16457328
Length = 160
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 214 SQVVFPLHGSFEMVVHVF 161
S V PLHG+F +VHVF
Sbjct: 110 SSGVHPLHGNFVALVHVF 127
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 26.2 bits (55), Expect = 6.9
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -1
Query: 319 DSGGVTAPRVIEDK---LFPLDFVRKVTYFDTRLFLRASQVVFPL 194
D P V+EDK L PLD + V+ T+LF + FPL
Sbjct: 1274 DGCNKNGPSVVEDKGVILLPLDDILAVS---TKLFSSGDDMAFPL 1315
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 178 FQKSHEVETRLGMLGEKAGYRNK*PYVRN 264
+Q SHEV+ ++ + G+RN PY R+
Sbjct: 3037 WQYSHEVKKLHKIINKSGGFRNPVPYERS 3065
>06_01_0172 + 1362101-1363708
Length = 535
Score = 26.2 bits (55), Expect = 6.9
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -2
Query: 318 IPAASPRPV*SKINFFPLISYVRSLISIPGFFSEHPKSCFHFMALL 181
+PA S RP + P + +R +S+P F+ HP S F ALL
Sbjct: 121 LPAFSDRPFLPLLRSLPPLPSLRLFLSLPS-FNSHP-SVRSFNALL 164
>01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755
Length = 482
Score = 26.2 bits (55), Expect = 6.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 267 LISYVRSLISIPGFFS 220
LISYVR ++ PGF S
Sbjct: 217 LISYVREIVKAPGFLS 232
>11_06_0204 + 21191611-21192807
Length = 398
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 75 PGAIWTLPLTCSSLRHQMHPGDCDLF 152
PG W P SSLR HP CD +
Sbjct: 89 PGVAWFAPT--SSLRRLPHPHHCDWY 112
>06_03_0190 - 17708513-17708548,17708897-17709295
Length = 144
Score = 25.8 bits (54), Expect = 9.1
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 106 VHRFVTKCTLETAIYFSAGKRVRPFQKSHEVETRLGMLGEKAGYRNK*P 252
VHR ++C +ET + G+R+ + + T +G ++AG R + P
Sbjct: 83 VHRGTSECIIETGAWQRDGQRLEASAEGGDAGT-VGRGRQRAGERRQSP 130
>03_05_0793 +
27755704-27756386,27756473-27757274,27757379-27757634,
27758355-27758566,27760494-27760709
Length = 722
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -1
Query: 337 PVGFYRDSG--GVTAPRVIEDKLFPLDFVR 254
P+G+ R G GVTAP+ +++K+ FVR
Sbjct: 223 PLGWSRSPGLAGVTAPQFLQNKVKQPPFVR 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,935,355
Number of Sequences: 37544
Number of extensions: 228132
Number of successful extensions: 637
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -