Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0073
         (346 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   4.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   5.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   5.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   5.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   5.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   9.5  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 220 RASQVVFPLHGSFEMVVHVF 161
           RAS++VFPL   F + ++VF
Sbjct: 425 RASRIVFPL---FFLAINVF 441



 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/31 (25%), Positives = 14/31 (45%)
 Frame = -1

Query: 100 NGRVQIAPGCDNSSGCPIENHSLHLSLASCP 8
           +GRV  +      +GCP+   +  +    CP
Sbjct: 115 DGRVLYSSRLTIKAGCPMNLENFPMDTQRCP 145


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = +2

Query: 140 LRSILVQENVYDHFKRAMKWKHDLGCSEKKPGI 238
           L S  ++   Y+       WK+D G   K P +
Sbjct: 199 LCSFAIESISYEQTAITYVWKNDEGTLRKSPSL 231


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = +2

Query: 140 LRSILVQENVYDHFKRAMKWKHDLGCSEKKPGI 238
           L S  ++   Y+       WK+D G   K P +
Sbjct: 199 LCSFAIESISYEQTAITYVWKNDEGTLRKSPSL 231


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = +2

Query: 140 LRSILVQENVYDHFKRAMKWKHDLGCSEKKPGI 238
           L S  ++   Y+       WK+D G   K P +
Sbjct: 250 LCSFAIESISYEQTAITYVWKNDEGTLRKSPSL 282


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = +2

Query: 140 LRSILVQENVYDHFKRAMKWKHDLGCSEKKPGI 238
           L S  ++   Y+       WK+D G   K P +
Sbjct: 199 LCSFAIESISYEQTAITYVWKNDEGTLRKSPSL 231


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 96  PLTCSSLRHQMH 131
           PL  S + HQMH
Sbjct: 162 PLVESQMHHQMH 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,912
Number of Sequences: 438
Number of extensions: 2004
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)