Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0072
(417 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0314 - 14190245-14191006 30 0.86
12_02_0001 - 12066231-12066341,12066745-12066825,12067056-120671... 28 2.6
06_01_0675 + 4937309-4937354,4937606-4937718,4937810-4937905,493... 28 2.6
01_01_0903 - 7103091-7103120,7104092-7104651,7105208-7105328,710... 28 2.6
01_06_0424 - 29237398-29237730,29238620-29238668,29240099-29240544 27 4.6
11_04_0442 - 17790811-17790889,17791047-17791114,17791144-177911... 27 8.0
03_01_0072 + 590008-590077,590284-590315,591874-592506 27 8.0
>06_02_0314 - 14190245-14191006
Length = 253
Score = 29.9 bits (64), Expect = 0.86
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 348 RIVYFFNVVLSILDFLSVLPVVSKSGACF 262
R + FF+ VLS++ FLSV GACF
Sbjct: 181 RFIDFFHAVLSLIVFLSVAMFDHNVGACF 209
>12_02_0001 -
12066231-12066341,12066745-12066825,12067056-12067136,
12068017-12068097,12068337-12068417,12068492-12068572,
12068647-12068727,12070748-12070828,12070903-12070983,
12071551-12071631,12072036-12072116,12072519-12072599,
12072839-12072919,12073468-12073548,12074108-12074188,
12074428-12074508,12075076-12075156,12075396-12075476,
12075561-12075641,12076356-12076436,12076676-12076756,
12077326-12077406,12077811-12077891,12078131-12078211,
12078286-12078366,12079586-12079666,12079906-12079986,
12081341-12081421,12081793-12081873,12083074-12083154,
12083714-12083794,12084034-12084114,12084354-12084434,
12084674-12084754,12084829-12084909,12084984-12085064,
12085304-12085384,12087109-12087189,12087429-12087509,
12087584-12087664,12089204-12089284,12090339-12090419,
12090659-12090739,12091621-12091701,12092754-12092834,
12093074-12093154,12093155-12093310,12093550-12093630,
12094454-12094512,12094610-12094691,12096312-12096392,
12096789-12096869,12097768-12097907,12099296-12099377,
12100185-12100265,12100999-12101079,12101484-12101564,
12101814-12101894,12102628-12102708,12103744-12103824,
12104869-12104949,12105189-12105269,12105509-12105589,
12106322-12106402,12106477-12106557,12107448-12107528,
12108050-12108145,12109578-12109584,12110097-12110293
Length = 1929
Score = 28.3 bits (60), Expect = 2.6
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = -1
Query: 357 VLGRIVYFFNVVLSILDFLSVLPVVSKSGACF 262
VLG V ++V+ +L+F ++P++++ GA F
Sbjct: 652 VLGAFVAENHIVIRVLNFCQLMPILAQVGAMF 683
>06_01_0675 +
4937309-4937354,4937606-4937718,4937810-4937905,
4938003-4938059,4938145-4938300,4938402-4938486,
4938727-4938817,4938896-4939060,4939150-4939345,
4939593-4939731,4940187-4941874,4942575-4942765,
4942850-4942994
Length = 1055
Score = 28.3 bits (60), Expect = 2.6
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +1
Query: 124 DVFQIDIEPEEAQKYLNSPPFT---DPQLAGRTAVLPLIKYNDPRFRTVEAG 270
D I I A NS PFT +P+ + V+PL KYN + V G
Sbjct: 243 DSMHIGILAAAAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLG 294
>01_01_0903 -
7103091-7103120,7104092-7104651,7105208-7105328,
7105545-7106567
Length = 577
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 11 ELYCDTSIE-LKKKRRNMLRMCLFSPWSQLC 100
EL+ DT+ E L++K R +C WSQ C
Sbjct: 483 ELFVDTATEQLERKHRQRNSLCYTGIWSQKC 513
>01_06_0424 - 29237398-29237730,29238620-29238668,29240099-29240544
Length = 275
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -3
Query: 358 GIGTHRILLQRSPQYSRFPFRSSSSVQEWGLLQLC 254
G G R+L PQ P RSSS +Q L LC
Sbjct: 54 GGGDDRLLHHEDPQLPHRPHRSSSPIQPRPLSLLC 88
>11_04_0442 -
17790811-17790889,17791047-17791114,17791144-17791166,
17791210-17795913,17797414-17797624,17798478-17798666
Length = 1757
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 289 WKNGKEIENTEDYVEEVYDASQYHGQDGLGAY 384
W+N K +E + DY Y A Q +D L A+
Sbjct: 714 WRNEKYVELSSDYKSANYFAGQCTSEDQLMAF 745
>03_01_0072 + 590008-590077,590284-590315,591874-592506
Length = 244
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 136 IDIEPEEAQKYLNSPPFTDPQLAGRTAV 219
+D+E E+ Q+ PP+ +AGR AV
Sbjct: 1 MDMETEKQQQQTRCPPWLQAAIAGRQAV 28
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,708,354
Number of Sequences: 37544
Number of extensions: 237369
Number of successful extensions: 657
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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