Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0072
(417 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43247| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.22
SB_57436| Best HMM Match : SCP (HMM E-Value=3.9e-13) 31 0.50
SB_36350| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_8469| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_24886| Best HMM Match : Extensin_2 (HMM E-Value=0.0032) 27 4.7
SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002) 27 6.2
SB_12718| Best HMM Match : rve (HMM E-Value=0.0031) 27 6.2
SB_3897| Best HMM Match : DUF1662 (HMM E-Value=4.4) 27 6.2
SB_42678| Best HMM Match : Helicase_C (HMM E-Value=1.4e-24) 27 6.2
SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23) 27 6.2
SB_5380| Best HMM Match : zf-CXXC (HMM E-Value=2.9) 27 8.2
>SB_43247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 31.9 bits (69), Expect = 0.22
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 196 QLAGRTAVLPLIKYNDPRFRTVEAGPTLGHYWKNGKEIENTEDYVEEVY 342
QLA + + ++ ++ GP LG + KN + N ED V +VY
Sbjct: 281 QLANISQFMMMLSIQTDEMARLKGGPLLGEFVKNMRGFANAEDGVRKVY 329
>SB_57436| Best HMM Match : SCP (HMM E-Value=3.9e-13)
Length = 265
Score = 30.7 bits (66), Expect = 0.50
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Frame = +2
Query: 203 LAAPLSYH*S-----NTTTRGFAQLKQAPLLDTTGRTERKSRILRTTLKKYTMRPNTTDK 367
LA SYH S + T+R + K L +TTG E S T+L + T P TT+
Sbjct: 10 LADGCSYHRSFSSSPDETSRNTSLPKTTSLPETTGLPETTSLPETTSLPETTSLPETTNL 69
Query: 368 TV*VHMPTDTKLP 406
+P T LP
Sbjct: 70 PETTSLPETTNLP 82
>SB_36350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 29.1 bits (62), Expect = 1.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 316 TEDYVEEVYDASQYHGQDGLGAYAYGYQTPE 408
TE + + S YHGQDGLG A G + P+
Sbjct: 151 TEGLTGDFVELSAYHGQDGLGD-AQGLREPD 180
>SB_8469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 27.9 bits (59), Expect = 3.6
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 259 VEAGPTLGHYWKNGKEIENTEDYVEEVYDASQYHGQDGLGAYAYGYQTP 405
VEAG L + + + + +VE AS+ G++GL A A G TP
Sbjct: 229 VEAGRRLAKWNRQNRAKKKAVQHVESPV-ASESQGREGLRARAEGIHTP 276
>SB_24886| Best HMM Match : Extensin_2 (HMM E-Value=0.0032)
Length = 807
Score = 27.5 bits (58), Expect = 4.7
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +3
Query: 171 KQPTIHRSSISWPHRCLTIDQIQRPEVSHS*SRPHSWT 284
KQ +HR P RCL+ID I + S P S T
Sbjct: 455 KQVPVHRYHSPRPSRCLSIDTILHDQAGACPSIPFSTT 492
>SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 27.1 bits (57), Expect = 6.2
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 275 LLDTTGRTERKSRILRTTLKKYTMRPNT-TDKTV*VHMPT 391
+++TT TE + I TT K T P T T+ T PT
Sbjct: 12 IIETTTTTEEPTTITETTTTKTTEEPTTITETTTTTEEPT 51
>SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
Length = 765
Score = 27.1 bits (57), Expect = 6.2
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3
Query: 171 KQPTIHRSSISWPHRCLTIDQIQRPEVSHS*SRPHSWT 284
K P +HR P CL+ID I + S P S T
Sbjct: 510 KHPPVHRYHSPRPSTCLSIDTILHDQARACSSPPFSMT 547
>SB_12718| Best HMM Match : rve (HMM E-Value=0.0031)
Length = 1667
Score = 27.1 bits (57), Expect = 6.2
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 259 VEAGPTLGHYWKNGKEIENTEDYVEEVYDASQYHGQDGLGAYAYGYQTP 405
VEAG L + + + +N +VE AS+ G++GL A G TP
Sbjct: 1098 VEAGRRLAKWNRLNRAKKNAVQHVESPV-ASESQGREGLRPRAEGIHTP 1145
>SB_3897| Best HMM Match : DUF1662 (HMM E-Value=4.4)
Length = 300
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 162 LCFFGLDVNLEDVDAG-FRRRRHNCDHGENR 73
LCF + +NLED + G R+R+H + NR
Sbjct: 266 LCFEAMGMNLEDQNRGRKRKRKHKRNASANR 296
>SB_42678| Best HMM Match : Helicase_C (HMM E-Value=1.4e-24)
Length = 1058
Score = 27.1 bits (57), Expect = 6.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 268 GPTLGHYWKNGKEIENTEDYVEEV 339
GP L H W+ G E +N E+ V+ V
Sbjct: 723 GPRLRHVWRGGGEEKNQENCVKYV 746
>SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23)
Length = 1250
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 333 FNVVLSILDFLSVLPVVSKSGACFNCAKPRVVVFD 229
F + + D V+ VS +G FN +KP VVF+
Sbjct: 1002 FTFSIQVTDDGRVVTDVSPNGLTFNVSKPNTVVFN 1036
>SB_5380| Best HMM Match : zf-CXXC (HMM E-Value=2.9)
Length = 231
Score = 26.6 bits (56), Expect = 8.2
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3
Query: 345 CVPIPRTRRSRCICLRIPNSRICE 416
C +P S CICLR +C+
Sbjct: 32 CNEVPNKNTSICICLRCSKQNLCQ 55
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,367,637
Number of Sequences: 59808
Number of extensions: 267309
Number of successful extensions: 902
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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