Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0072
(417 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006648-10|AAF39859.1| 305|Caenorhabditis elegans Btb and math... 30 0.78
Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical pr... 28 3.1
L14433-1|AAA27979.1| 398|Caenorhabditis elegans Hypothetical pr... 28 3.1
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 27 7.2
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 27 7.2
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 27 7.2
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 27 7.2
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 27 7.2
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 27 7.2
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 26 9.5
AC006632-1|AAK85466.1| 311|Caenorhabditis elegans Hypothetical ... 26 9.5
>AC006648-10|AAF39859.1| 305|Caenorhabditis elegans Btb and math
domain containingprotein 5 protein.
Length = 305
Score = 29.9 bits (64), Expect = 0.78
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Frame = +1
Query: 274 TLGHYWKNGKEIEN-------TEDYVEEVYDASQYHGQDGLGAYAYGYQTPESA 414
TL H +KN ++E+ ED+ ++ S H ++ LG Y Y Y++ ESA
Sbjct: 9 TLRHIFKNVSQLEDGKYLYSPDEDHFNVDWNMSISHKKEKLGVYFYCYKSEESA 62
>Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical
protein T20G5.5 protein.
Length = 1234
Score = 27.9 bits (59), Expect = 3.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 339 IRCVPIPRTRRSRCICLRIPNSRI 410
+RC+ R RRSR +C+ + R+
Sbjct: 104 VRCLKASRRRRSRRVCIEVEEDRV 127
>L14433-1|AAA27979.1| 398|Caenorhabditis elegans Hypothetical
protein C50C3.7 protein.
Length = 398
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/66 (27%), Positives = 25/66 (37%)
Frame = +1
Query: 205 GRTAVLPLIKYNDPRFRTVEAGPTLGHYWKNGKEIENTEDYVEEVYDASQYHGQDGLGAY 384
GR ++ IK D RF+ G GH G ++ Y D+ HG + G
Sbjct: 88 GRKQLIGQIKRIDYRFQRNTMGGLTGHKGSIGVRLQLASPYSIVFVDSHFIHGPENYGKR 147
Query: 385 AYGYQT 402
Y T
Sbjct: 148 VEQYHT 153
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 329 LKKYTMRPNTTDKTV*VHMPTDTKLPNLR 415
L KY +R +TTD+ V P + LP+ R
Sbjct: 398 LDKYNIRQHTTDEDTIVLQPQEPGLPSFR 426
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 329 LKKYTMRPNTTDKTV*VHMPTDTKLPNLR 415
L KY +R +TTD+ V P + LP+ R
Sbjct: 398 LDKYNIRQHTTDEDTIVLQPQEPGLPSFR 426
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 329 LKKYTMRPNTTDKTV*VHMPTDTKLPNLR 415
L KY +R +TTD+ V P + LP+ R
Sbjct: 398 LDKYNIRQHTTDEDTIVLQPQEPGLPSFR 426
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 329 LKKYTMRPNTTDKTV*VHMPTDTKLPNLR 415
L KY +R +TTD+ V P + LP+ R
Sbjct: 398 LDKYNIRQHTTDEDTIVLQPQEPGLPSFR 426
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 329 LKKYTMRPNTTDKTV*VHMPTDTKLPNLR 415
L KY +R +TTD+ V P + LP+ R
Sbjct: 398 LDKYNIRQHTTDEDTIVLQPQEPGLPSFR 426
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 329 LKKYTMRPNTTDKTV*VHMPTDTKLPNLR 415
L KY +R +TTD+ V P + LP+ R
Sbjct: 398 LDKYNIRQHTTDEDTIVLQPQEPGLPSFR 426
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical
protein T28C6.9 protein.
Length = 1861
Score = 26.2 bits (55), Expect = 9.5
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 117 RHRRLPN*HRARRSTEVLKQPTIHRSSISWPHRCLTIDQIQRPEVSHS*SRPHSWTLLEE 296
R L N R++T+VL+ P+I + + P + T Q E SH S + E+
Sbjct: 283 RELELKNGPVQRKTTQVLEPPSIEQIQMVQPVQMTTSAAPQASESSHQYEMTTSTSSSEK 342
Query: 297 RK 302
R+
Sbjct: 343 RR 344
>AC006632-1|AAK85466.1| 311|Caenorhabditis elegans Hypothetical
protein F28A10.1 protein.
Length = 311
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -1
Query: 186 EWWAV*VLLCFFGLDVNLEDVDAGFRRRRHNCDHGEN--RHIRSM 58
E W V F + + ED F ++ CDH N +H+R++
Sbjct: 45 EEWNSCVAQKFLAIPMTAEDFWGSFEKKSRACDHDTNVTQHLRAI 89
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,839,643
Number of Sequences: 27780
Number of extensions: 198581
Number of successful extensions: 579
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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