Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0070
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003150-5|AAB54213.1|  474|Caenorhabditis elegans Hypothetical ...    28   4.2  
Z79759-2|CAB02137.1|  255|Caenorhabditis elegans Hypothetical pr...    27   7.4  

>AF003150-5|AAB54213.1|  474|Caenorhabditis elegans Hypothetical
           protein T05E7.1 protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 222 YVISQLLPGEHFG*FPDFPAH 160
           +V S+L+PG HF  FP FP H
Sbjct: 383 HVESELVPGGHFLYFPYFPHH 403


>Z79759-2|CAB02137.1|  255|Caenorhabditis elegans Hypothetical
           protein ZK858.2 protein.
          Length = 255

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = -2

Query: 577 KVSKPATVCWSPSLDLRNLTWMVYHISV*GL**TICRQPFQRPLAHCYIERRIFLFRSRQ 398
           +V+ P TV  +  + +R L    YHIS   L   +  +   R +      RR+   R+RQ
Sbjct: 41  EVATPVTVSPTDFMPIRELVTTPYHISTPVLITPVDARSISREIVRVNRIRRV---RTRQ 97

Query: 397 ASRMV 383
           ASR V
Sbjct: 98  ASRSV 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,037,949
Number of Sequences: 27780
Number of extensions: 227013
Number of successful extensions: 636
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)