Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0063
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   1.4  
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   3.2  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
 Frame = -1

Query: 473 PPVNCTRPNE---VWCPSPPPC----LQETCDDVDLPPVPCNEFIKSSPRCICKDNYFRN 315
           PPV C  P       C  P  C    ++  C     P  PC  F+K   RC+C  +   N
Sbjct: 631 PPVACGTPIPDCPYLCVLPKSCHHPQVKHNCHPTSEPCPPCPYFVKK--RCLCGKHILEN 688


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -1

Query: 449 NEVWCPSPPPCLQETCDDVDLPPVPCNEFIKSS-PRCICKDNYFRNDSGICVCAQECRDI 273
           N   C +  P L  TC +    PV CN  +++      C++  ++   GICV   + R  
Sbjct: 194 NMTLCNTDYPYLVNTCFNGTQYPVNCNSALRTPFGGATCRNIGYKG-QGICVYTNDSRIP 252

Query: 272 NAPDY 258
            A D+
Sbjct: 253 VADDH 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,484
Number of Sequences: 5004
Number of extensions: 38927
Number of successful extensions: 78
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)