Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0063
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0869 - 21174868-21175242 32 0.26
09_06_0083 + 20753191-20754480 30 1.1
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 29 1.9
01_01_0833 - 6517489-6517503,6517762-6517827,6517938-6518006,651... 29 1.9
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650... 29 1.9
02_05_0442 - 29044736-29046604 29 3.3
04_03_0130 - 11622139-11623325,11626144-11627116 28 4.3
12_01_0592 + 4848467-4849164,4849413-4849491 27 7.5
11_04_0376 - 16965504-16966101,16966212-16966416,16967175-169681... 27 10.0
09_04_0483 + 17979566-17980019,17980242-17980321,17980431-179808... 27 10.0
09_03_0023 + 11617562-11617692,11617773-11617844,11620438-116205... 27 10.0
03_05_0081 - 20577619-20577632,20577760-20577998,20578817-205788... 27 10.0
>10_08_0869 - 21174868-21175242
Length = 124
Score = 32.3 bits (70), Expect = 0.26
Identities = 17/63 (26%), Positives = 24/63 (38%)
Frame = -1
Query: 482 TDCPPVNCTRPNEVWCPSPPPCLQETCDDVDLPPVPCNEFIKSSPRCICKDNYFRNDSGI 303
TDCPP RP+ CP L+ + + L P C D D+ +
Sbjct: 25 TDCPPAPRPRPSTGSCPRDALKLRVCANVLGLVKAKVGAVAPYEPCCSLLDGLVDLDAAV 84
Query: 302 CVC 294
C+C
Sbjct: 85 CLC 87
>09_06_0083 + 20753191-20754480
Length = 429
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -1
Query: 485 STDCPPVNCTRPNEVWCPSPPPCLQETCDDVDLPPVPCNEFIKSSP 348
S D PPV+ T P++ P PP D+ LPP P + SP
Sbjct: 230 SPDQPPVD-TMPDQPLLPPPPADATPATPDLPLPPPPPADTYPVSP 274
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = -1
Query: 470 PVNCTRPNEVWCPSPPPCLQETCDDVDLPPVPCNEFIKSSPRC 342
P +C +P C P PC + + PP P E P C
Sbjct: 120 PCHCEKPKPCHCEKPKPCEKPPPCKPEEPPKPPPEKPPPKPEC 162
>01_01_0833 -
6517489-6517503,6517762-6517827,6517938-6518006,
6518104-6518214,6518319-6518526,6518598-6518653,
6519048-6519689
Length = 388
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 374 CNEFIKSSPRC-ICKDNYFRNDSGICVCAQECR 279
C++ ++S C ICK + D G VC EC+
Sbjct: 337 CDKLLQSKQYCGICKKIWHHTDGGNWVCCDECQ 369
>01_01_0832 -
6500139-6500333,6500610-6500875,6501494-6501815,
6501915-6502156,6502229-6502457,6503020-6503184,
6503279-6503605,6504150-6504191,6504333-6504400,
6504748-6504934,6506249-6506311,6506748-6506790,
6506919-6507019,6507110-6507184,6507359-6507445,
6507593-6507682,6507906-6507992,6508585-6508783,
6509113-6509177,6509502-6509606,6509726-6509871,
6510100-6510224,6510335-6510437,6510482-6510596,
6510734-6510869,6511298-6511387,6511484-6511578,
6511698-6511763,6511868-6511936,6512034-6512147,
6512241-6512448,6512545-6512600,6512818-6513552
Length = 1671
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 374 CNEFIKSSPRC-ICKDNYFRNDSGICVCAQECR 279
C++ ++S C ICK + D G VC EC+
Sbjct: 369 CDKLLQSKQYCGICKKIWHHTDGGNWVCCDECQ 401
>02_05_0442 - 29044736-29046604
Length = 622
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 392 DLPPVPCNEFIKSSPRCICKDNYFRN 315
+LPP PC + PRC+ Y RN
Sbjct: 143 ELPPTPCPVVRGAIPRCLAGGAYIRN 168
>04_03_0130 - 11622139-11623325,11626144-11627116
Length = 719
Score = 28.3 bits (60), Expect = 4.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 434 PSPPPCLQETCDDVDLP 384
P PPP + C DVD+P
Sbjct: 29 PQPPPACRRRCGDVDIP 45
>12_01_0592 + 4848467-4849164,4849413-4849491
Length = 258
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 373 QGTGGRSTSSQVSCKQGGGDG 435
QG GGR S++ +QGGG G
Sbjct: 145 QGQGGRPWDSRLMLRQGGGGG 165
>11_04_0376 -
16965504-16966101,16966212-16966416,16967175-16968197,
16968241-16968892,16969025-16969387,16970095-16970451
Length = 1065
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 536 CKLNYKRRSETDRRCILSTDCPPVNCTRPNEVW 438
C + R+ET R + +T +NC P+E W
Sbjct: 280 CDIIVTTRNETVARLVQTTQMYNMNCLSPDESW 312
>09_04_0483 +
17979566-17980019,17980242-17980321,17980431-17980895,
17981460-17981597,17982574-17982660,17982781-17982909,
17983034-17983225,17983393-17983479,17983707-17984378
Length = 767
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -1
Query: 440 WCPSPPPCLQETCDDVDLPP 381
W PSPP DDVD PP
Sbjct: 13 WKPSPPRPQGREADDVDQPP 32
>09_03_0023 +
11617562-11617692,11617773-11617844,11620438-11620595,
11620677-11620939,11621041-11621167,11621748-11621816,
11621931-11622120,11622309-11622672
Length = 457
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -2
Query: 214 IKC*RCAKIPTYVIRFDVSNTKLNSVISYYFSELD*VQFCFFFN 83
+KC ++ +I D+SN+ L+ VIS F+ L +++ + N
Sbjct: 29 VKCKNSSENIPRIISIDLSNSNLHGVISSNFTSLTALEYLYESN 72
>03_05_0081 -
20577619-20577632,20577760-20577998,20578817-20578873,
20579001-20579632,20582728-20583105
Length = 439
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 382 GGRSTSSQVSCKQGGGDGHQTSLGLVQFTGGQSV 483
GG ST + GGG GH S L + +SV
Sbjct: 25 GGSSTRRREGAAAGGGGGHAASAELERILADESV 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,408,580
Number of Sequences: 37544
Number of extensions: 287877
Number of successful extensions: 881
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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