Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0063
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    31   0.010
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    31   0.010

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 30.7 bits (66), Expect = 0.010
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -1

Query: 449 NEVWCPSPPPCLQETCDDVDLPPVPCNEFIKSSPRCICKDNYFRNDSGICVCAQEC 282
           NE++      C Q  C +V +P   C +    +P C+C+  Y RN   +CV   +C
Sbjct: 40  NEIFSRCDGRC-QRFCPNV-VPKPLCIKIC--APGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 24.6 bits (51), Expect = 0.67
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 545 GCICKLNYKRRSETDRRCILSTDCPP 468
           GC+C+L Y R  +  + C+  + C P
Sbjct: 70  GCVCRLGYLRNKK--KVCVPRSKCLP 93


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 30.7 bits (66), Expect = 0.010
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -1

Query: 449 NEVWCPSPPPCLQETCDDVDLPPVPCNEFIKSSPRCICKDNYFRNDSGICVCAQEC 282
           NE++      C Q  C +V +P   C +    +P C+C+  Y RN   +CV   +C
Sbjct: 40  NEIFSRCDGRC-QRFCPNV-VPKPLCIKIC--APGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 545 GCICKLNYKRRSETDRRCILSTDC 474
           GC+C+L Y R  +  + C+  + C
Sbjct: 70  GCVCRLGYLRNKK--KVCVPRSKC 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,044
Number of Sequences: 438
Number of extensions: 3231
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)