Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0060
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 30 0.26
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.4
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 27 1.8
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr... 27 2.4
SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce... 26 4.2
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 26 5.5
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 26 5.5
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 25 7.3
SPBC16E9.15 |||heat shock factor binding protein |Schizosaccharo... 25 9.7
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 25 9.7
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 25 9.7
SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|c... 25 9.7
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 30.3 bits (65), Expect = 0.26
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 282 RVKDGEATCRGLEGNESVNTPVTSCTSDICDRNVCFALSSGLI 410
R D + GL NESV PVTS R VC + G+I
Sbjct: 121 RTNDFQILKPGLSSNESVTLPVTSLAISNSKRIVCQGHAGGII 163
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 302 SFPILYSSLDLNLLQSLEFFEFRLASRSKSSEE 204
+FP +YS + NLL S+ FE R+ + + +EE
Sbjct: 1198 TFPSVYSKDNPNLLFSMTGFEVRILPKIRQNEE 1230
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 172 IR*RAYSTCPSSSEDFDLDARRNSKNSSDCKRFRSKLE 285
+R + YS S S+DF + N S+ KRFR L+
Sbjct: 585 LRIKPYSDWSSFSKDFTIPLSSNINTSAPMKRFRGLLK 622
>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 339 TPVTSCTSDICDRNVCFALSSGLIQ 413
+P+T C + + CFA ++GLIQ
Sbjct: 81 SPLTECCQNYYSKKQCFANTTGLIQ 105
>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +2
Query: 47 CARMAQLSELLKAELRRVRGTTQNAHNTEYMKNVTLKFLTLPSGDERIRLVPVLQK 214
C + L+E EL+ G T HN + + K ++ + DER+ + L+K
Sbjct: 146 CVTLGMLNEQQAKELKDA-GLTAYNHNLDTSREYYSKIISTRTYDERLNTIDNLRK 200
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 160 PNPSIR*RAYSTCPSSSEDFDLDARRNSKNSSDCKRFRSKLE 285
P SI +A S + + +RRNSKN +D ++ +S LE
Sbjct: 439 PTSSINGKASSESANGTSYSKGSSRRNSKNETDEEKRKSFLE 480
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 244 LSFVWRQGQNLLKNWDKSNTLVTGWK 167
LS V+ Q NLL+N +KS L+ W+
Sbjct: 552 LSGVFNQIANLLENKEKSRELLEAWQ 577
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 7.3
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -1
Query: 421 LKR*IKPLDKAKHTFRSQMSLVHEVTGVFTDSFPSRPRQVASPSF 287
++R IK K H Q + V + V DS+P+ P QVA P F
Sbjct: 212 IRRKIKRFKKYSH----QQTNVFDTLNVI-DSYPTAPDQVALPPF 251
>SPBC16E9.15 |||heat shock factor binding protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 75
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +2
Query: 98 VRGTTQNAHNTEYMKNVTLKFLTLPSGDERIRLVPVLQKILTLTPDETQKIQAIAKGLDP 277
VRG ++N +T + +T K L SGD +K+ T++ Q +++ + ++
Sbjct: 5 VRGNSKNPQSTSAITTLTDKLLEDISGDFETLQKQFSEKLETMSTRLDQLEESMREAMNK 64
Query: 278 NSS 286
SS
Sbjct: 65 KSS 67
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/41 (26%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = -3
Query: 335 YRFISLQA-TASSFPILYSSLDLNLLQSLEFFEFRLASRSK 216
++F+++ + +SFP+ Y +L+ + + EF+L+S S+
Sbjct: 114 FKFVAIHPYSKTSFPVSYDLDELDTMWLTYYNEFQLSSNSE 154
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 125 NTEYMKNVTLKFLTLPSGDERI 190
NT+ ++ LKFL LPS D+ +
Sbjct: 320 NTKSVEECILKFLNLPSSDKAL 341
>SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 146
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
Frame = +3
Query: 588 YIFFFL----SLKKYVNFIFNYHTFH 653
++FFF +LKK + FI +H++H
Sbjct: 19 FVFFFKKLNNTLKKSLQFIMRFHSYH 44
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,665
Number of Sequences: 5004
Number of extensions: 46992
Number of successful extensions: 146
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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