Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0060
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.5  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   6.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.0  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -1

Query: 133 LGVMCILRGPSHP--TQLCLKEFAELSHT 53
           L + C ++  S+P  TQ+C      LSHT
Sbjct: 128 LVLSCAMKFESYPHDTQICSMMIESLSHT 156


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 251 EFFEFRLASRSKSSEELGQVEYARHRM 171
           E+ E+R  SR +S +  G+     HR+
Sbjct: 303 EYREYRETSRERSRDRRGRGRSREHRI 329


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 211 LKNWDKSNTLVTGWK 167
           +KN DK N ++  WK
Sbjct: 461 IKNADKDNEVIEDWK 475


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,564
Number of Sequences: 438
Number of extensions: 3479
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)