BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= P5PG0060 (661 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing ... 41 8e-04 At1g63240.1 68414.m07148 expressed protein 30 1.6 At2g42180.1 68415.m05220 expressed protein 29 2.7 At3g42820.1 68416.m04484 hypothetical protein hypothetical prote... 28 4.8 >At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing protein contains Pfam profile PF01465: GRIP domain; supporting cDNA gi|20303028|gb|AF499634.1| Length = 788 Score = 40.7 bits (91), Expect = 8e-04 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Frame = +2 Query: 26 LSESERECARMAQLSELLKAELRRV-RGTTQNAHNTEYMKNVTLKFLTLPSGDERIRLVP 202 + E ERE +Q +LK ELR + R + + Y+KNV LK L +G+ L+P Sbjct: 680 IEELERENRLHSQQEAVLKTELREMERKQKREGVDMTYLKNVILKLLE--TGEVEA-LLP 736 Query: 203 VLQKILTLTPDETQKIQ 253 V+ +L +P+E QK Q Sbjct: 737 VVGMLLQFSPEEIQKCQ 753 >At1g63240.1 68414.m07148 expressed protein Length = 548 Score = 29.9 bits (64), Expect = 1.6 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%) Frame = -1 Query: 208 KNWDKSNTLVTGWKG*E---LESDVLHVLG 128 KNW+KS + TG + E LESDV+H+ G Sbjct: 286 KNWNKSESDETGTRNIEIIDLESDVIHISG 315 >At2g42180.1 68415.m05220 expressed protein Length = 166 Score = 29.1 bits (62), Expect = 2.7 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = -2 Query: 618 IFLNLKKRKCKLLFKTLPLYSELKFIQHNIFFQSSHTD*PL 496 + + + K K LF + ++ QHNIFF SSH P+ Sbjct: 40 VLIEISKHNKKRLFMMMFYTTKSSMNQHNIFFGSSHVVVPV 80 >At3g42820.1 68416.m04484 hypothetical protein hypothetical proteins - Arabidopsis thaliana Length = 906 Score = 28.3 bits (60), Expect = 4.8 Identities = 13/36 (36%), Positives = 23/36 (63%) Frame = -2 Query: 612 LNLKKRKCKLLFKTLPLYSELKFIQHNIFFQSSHTD 505 L LKK+K KT+P+YS+L ++H++ +H + Sbjct: 105 LKLKKKK-GTAGKTIPVYSKLFGLEHDVTVDRAHAE 139 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,384,942 Number of Sequences: 28952 Number of extensions: 232690 Number of successful extensions: 643 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 633 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 643 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1383534864 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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