Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0058
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    34   0.015
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             33   0.035
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    27   1.7  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      27   2.3  
SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.3  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    25   7.0  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   9.2  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    25   9.2  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    25   9.2  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.2  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.2  

>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 34.3 bits (75), Expect = 0.015
 Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
 Frame = +1

Query: 280 KKI--FDKYKHEIRIAGGAVRDLLMGLTPKDLDFATTATP----EEMKEMFTAE-----E 426
           KKI   D+ + E+R AGG VRD L+ +   D+D A          +  + + A+     E
Sbjct: 26  KKIGQMDRKEPEVRFAGGWVRDKLLRIESHDIDVAIDCMSGFEFAQHLQSYLAQQHPDWE 85

Query: 427 VRMINVNG----ERH-GTITARINDKENFEVTTLRIDMVTDGRFADVQFTKDWKLDANRR 591
            ++I ++      +H  T TARI   +  ++  LR    T+   ++         DA RR
Sbjct: 86  TKVIKIDANPLKSKHLETATARIMGMD-IDIVNLRHHDYTNSNSSNKLVFGTPLEDALRR 144

Query: 592 DLTINSMF 615
           D TIN++F
Sbjct: 145 DATINALF 152


>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 33.1 bits (72), Expect = 0.035
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +1

Query: 307 EIRIAGGAVRDLLMGLTPKDLD 372
           E+R+AGG VRD L+GL+  DLD
Sbjct: 36  EVRLAGGWVRDKLLGLSSDDLD 57


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
 Frame = -2

Query: 494 FSLSLIRAVIVPCLSPLTFIILTSSAVNISFISSGVA-VVAKSRSFGVSPIK--RSLTAP 324
           F+ +L++A  + CL+     I + +  N +   S +  ++AK         K  ++ T  
Sbjct: 159 FNENLLKAWEIYCLAEAQTCIFSKANSNDTTSESIIVKILAKVFLLYEDAYKLFKNATGA 218

Query: 323 PAILISCLYLSKIFFRSITSSV 258
           P+I +   Y+ K+F+++IT  +
Sbjct: 219 PSIFVHWTYIQKLFYQTITYQI 240


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -2

Query: 203 HFKFKSIFDRNLLRLGSVTLHVPLSWKNCPTPKILLHALNITKKKLQIKV 54
           HF +K      ++R G   ++       CPT K  L AL I  KK ++ +
Sbjct: 164 HFFWKKDIGPQMIRKGLAVVYEGSDGVFCPTKKECLLALEIVAKKKKLSL 213


>SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -2

Query: 383 VVAKSRSFGVSPIKRSLTAPPAILISCLYLSKIFFRSITSSVNILLNSGESTLITIGFSR 204
           VV  S +F V+PI + L    ++ +SC  L  +F    T     +L + E  L    + +
Sbjct: 127 VVDVSPAFSVNPIDKKLAIGLSVGLSCCILIVLFLHFATRRERRILKN-EKELEMSSYRK 185

Query: 203 H 201
           H
Sbjct: 186 H 186


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 544 ADVQFTKDWKLDANR-RDLTINSMFLGFDGSVY 639
           A +QF + WK+   +  DL   S+F G  GS+Y
Sbjct: 438 AHIQFRRAWKIQNRKLEDLPYRSIF-GVYGSIY 469


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 446 LTFIILTSSAVNISFISSGVAVVAKSRSFGVSPIKRSLTAPPAI 315
           ++F I T +A  +S  S  VA +    +  +SP  RSLT+  A+
Sbjct: 56  ISFNIGTPTAPTVSTGSPAVASLHDQVAAAISPRNRSLTSTSAV 99


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 172 FRSKMDLNLKCRENPIVIKVDSPEFKSIFTEEVIDLKKIFDKYKHEIRI 318
           F+  M+    C E   + KVD P +KSI TE   ++K +  ++   I +
Sbjct: 7   FKGLMNSTAYCSE---LAKVDIPFYKSIDTEFNENIKSVSSRFMRLIEL 52


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 584 LASSFQSLVN*TSAKRPSVTISILKVVTS 498
           LASSF SL    SA +PS  +S+L  + S
Sbjct: 715 LASSFASLDFNASASQPSNNLSLLSSIPS 743


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 391 PEEMKEMFTAEEVRMINVNGERHG-TITARINDKENFEV 504
           PE+++ +F + E  +I +   RHG  I  R  D+ N ++
Sbjct: 598 PEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTNGDI 636


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
 Frame = -2

Query: 314 LISCLYLSKIFFRSITSSVNILL----NSGESTLITI-GFSRH 201
           +I+CL+++    RS+T S+++ L    + G S L T+ G + H
Sbjct: 157 IITCLWITYFLSRSVTYSISLSLTMNKHQGHSLLQTVSGLNYH 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,404
Number of Sequences: 5004
Number of extensions: 49170
Number of successful extensions: 113
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)