Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0058
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79757-4|CAB02125.2|  436|Caenorhabditis elegans Hypothetical pr...   189   2e-48
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    30   1.6  
Z70208-12|CAA94137.2|  209|Caenorhabditis elegans Hypothetical p...    29   2.1  
U80445-11|AAB37801.2|  479|Caenorhabditis elegans Hypothetical p...    29   2.1  
AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic in...    29   2.1  
Z78060-5|CAB01492.1|  216|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AL022271-2|CAA18350.1|  216|Caenorhabditis elegans Hypothetical ...    27   8.6  
AC024880-3|AAF60915.3|  675|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z79757-4|CAB02125.2|  436|Caenorhabditis elegans Hypothetical
           protein F55B12.4 protein.
          Length = 436

 Score =  189 bits (460), Expect = 2e-48
 Identities = 82/141 (58%), Positives = 114/141 (80%)
 Frame = +1

Query: 214 PIVIKVDSPEFKSIFTEEVIDLKKIFDKYKHEIRIAGGAVRDLLMGLTPKDLDFATTATP 393
           P  +K+D+ +F+++FT +++ L+ +F K  +E+RIAGGAVRDLLM + P D+DFA+TATP
Sbjct: 6   PTTMKIDNEDFRTLFTPQLLKLRDLFAKRNYELRIAGGAVRDLLMNIRPADVDFASTATP 65

Query: 394 EEMKEMFTAEEVRMINVNGERHGTITARINDKENFEVTTLRIDMVTDGRFADVQFTKDWK 573
            +MKEMF  +++RM++  GE HGTIT RI+D ENFE+TTLR+D+V DGR A V++T DW+
Sbjct: 66  TQMKEMFEEDKIRMLHKRGEEHGTITCRIDDCENFEITTLRVDIVCDGRRAQVEYTTDWQ 125

Query: 574 LDANRRDLTINSMFLGFDGSV 636
           LDANRRDLTINS+FL   G+V
Sbjct: 126 LDANRRDLTINSLFLDLHGNV 146


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
            protein Y47G6A.29 protein.
          Length = 2460

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 173  NLLRLGSVTLHVPLSWKNCPTPKILLHALNITKKKLQIKVAK 48
            N LR     +H    WK+    K+L  AL+ T +K+ +KV K
Sbjct: 1602 NFLRTVDKFIHTVECWKSVAMAKVLKLALDSTDEKVVVKVGK 1643


>Z70208-12|CAA94137.2|  209|Caenorhabditis elegans Hypothetical
           protein F54B11.4 protein.
          Length = 209

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +1

Query: 355 TPKDLDFATTATPEEMKEMFTAEEVRMINVNGE--RHGTITARINDKENFEVTTLRIDMV 528
           T   L+F  T   E  KE    E +   +  G   +H T  + +NDKENF+ +    D++
Sbjct: 106 TGNSLNFLKTEKVENEKERQHGE-ISTFSAGGSTLQHATYLSLVNDKENFQASGCGWDLI 164


>U80445-11|AAB37801.2|  479|Caenorhabditis elegans Hypothetical
           protein C50F2.8 protein.
          Length = 479

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +1

Query: 391 PEEMKEMFTAEEVRMINVNGERHG--TITARINDKENFEVTTLRIDMVTDGRFADVQFTK 564
           P+      T +  ++  V  E+HG   +  +IN+K N+++    +    DG+  DV F  
Sbjct: 130 PQYQSRKTTVDAGQLTQVEVEKHGGQLVVTKINEKSNYDLKPGDVITQVDGK--DVYFRA 187

Query: 565 DWKLDANRRDLTI 603
           D +    + +LT+
Sbjct: 188 DIENLKGKVELTV 200


>AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.H protein.
          Length = 365

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 307 EIRIAGGAVRDLLMGLTPKDL-DFATTATPEEMKEMFTAEEVRMINVNGERHGTITA 474
           +++   G + +LL       L DF+ T T E + +MF AE V    V G +  T+++
Sbjct: 304 QLQTRNGLLDELLASFDTNALADFSKTVTSENITKMFIAEAVAEEKVAGTKDRTLSS 360


>Z78060-5|CAB01492.1|  216|Caenorhabditis elegans Hypothetical
           protein C34D1.5 protein.
          Length = 216

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +1

Query: 148 VTDPSRRRFRSKMDLNLKCRENPIVIKVDSPEFKSIFTEEVIDLKKIFDKYKHEIRIAGG 327
           V +  R R  S+++  ++  EN   IK  +PE ++    E    KKI D Y H++     
Sbjct: 149 VMNQHRIRLLSQVEEQMRMLEN---IKSRNPELEAEIRYEA---KKIVDTYTHQVETKRK 202

Query: 328 AVRD 339
           A++D
Sbjct: 203 AIQD 206


>AL022271-2|CAA18350.1|  216|Caenorhabditis elegans Hypothetical
           protein C34D1.5 protein.
          Length = 216

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +1

Query: 148 VTDPSRRRFRSKMDLNLKCRENPIVIKVDSPEFKSIFTEEVIDLKKIFDKYKHEIRIAGG 327
           V +  R R  S+++  ++  EN   IK  +PE ++    E    KKI D Y H++     
Sbjct: 149 VMNQHRIRLLSQVEEQMRMLEN---IKSRNPELEAEIRYEA---KKIVDTYTHQVETKRK 202

Query: 328 AVRD 339
           A++D
Sbjct: 203 AIQD 206


>AC024880-3|AAF60915.3|  675|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.1 protein.
          Length = 675

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +1

Query: 238 PEFKSIFTEEVIDLKKIFDKYKHEIRIA 321
           PE + + T+ ++DL ++F   KH  +++
Sbjct: 623 PELQKVITDNILDLDELFQIMKHPAKLS 650


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,484,827
Number of Sequences: 27780
Number of extensions: 270174
Number of successful extensions: 782
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)