Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0057
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   2.8  
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|...    25   3.7  

>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 274 Y*YIDSSNFQLLINTKIYLKSLYLKFYT 191
           Y ++D   +   IN   YL   Y+ FYT
Sbjct: 458 YTFVDPYTYACYINNNSYLPPSYMDFYT 485


>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 572

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 30  YSYGNSKRV*NSTLSIQRARELTVTIEYAI 119
           Y Y  +K++  + +SIQR  E    I+YAI
Sbjct: 134 YQYEMAKKITCAAVSIQRPTEAPRLIDYAI 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,261,534
Number of Sequences: 5004
Number of extensions: 21624
Number of successful extensions: 41
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)