Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0057
         (370 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56089| Best HMM Match : CLN3 (HMM E-Value=9.8e-07)                  27   3.6  
SB_36361| Best HMM Match : ITAM (HMM E-Value=3.5)                      27   4.8  
SB_17139| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  

>SB_56089| Best HMM Match : CLN3 (HMM E-Value=9.8e-07)
          Length = 554

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 249 KLLESIY*YVKQKLCIPFYE 308
           ++ + IY Y  Q++C+PFY+
Sbjct: 330 RIRQEIYQYESQEICVPFYQ 349


>SB_36361| Best HMM Match : ITAM (HMM E-Value=3.5)
          Length = 208

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 244 IENYWNLYINT*SKNFVSLFTKIARTEEYEIYHTYREYR 360
           ++N WNLY  T + +F S +T         IY  Y + R
Sbjct: 1   MKNRWNLYFRTLNSDFDSRYTSRKENIPMGIYGGYAQAR 39


>SB_17139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 161 TPELFTFSEMCPFRNCIFNC 102
           T  LF  + +C   NC++NC
Sbjct: 91  TQPLFVAATLCRLNNCLYNC 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,820,542
Number of Sequences: 59808
Number of extensions: 139758
Number of successful extensions: 335
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)