Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0055
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    27   2.7  
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    26   4.7  

>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 385 IVSFTQSYKNYPD*LHILIKYCLF*CMYVMLF 290
           +VSF  S++   D L+   K CLF C+ + +F
Sbjct: 1   MVSFESSFERGTDFLNRNFKKCLFACISIFIF 32


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -1

Query: 569 RFGLRVPLLGHKIFKKTLIEVRSKFHKLK 483
           RFG+RV  L +++ +K ++ +   FH ++
Sbjct: 84  RFGVRVENLHYQVLEKDVLSLFENFHPIR 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,160
Number of Sequences: 5004
Number of extensions: 38745
Number of successful extensions: 71
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)